Analysis of interatomic Contacts of Structural Units in PDB entry:
5YPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YPU entry

There are 6 chains in PDB entry 5YPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5ARG 372
B
 SER 66LEU 71
B
 GLU 73VAL 87
C
 THR 5ARG 372
D
 SER 66LEU 71
D
 GLU 73VAL 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5YPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 61Right-handed alpha
Helix 2
AA2
A
78 92Right-handed alpha
Helix 3
AA3
A
97 101Right-handed 310
Helix 4
AA4
A
112 126Right-handed alpha
Helix 5
AA5
A
137 145Right-handed alpha
Helix 6
AA6
A
172 175Right-handed 310
Helix 7
AA7
A
181 193Right-handed alpha
Helix 8
AA8
A
194 197Right-handed 310
Helix 9
AA9
A
202 217Right-handed alpha
Helix 10
AB1
A
222 233Right-handed alpha
Helix 11
AB2
A
252 260Right-handed alpha
Helix 12
AB3
A
261 262Right-handed 310
Helix 13
AB4
A
263 268Right-handed 310
Helix 14
AB5
A
273 284Right-handed alpha
Helix 15
AB6
A
286 295Right-handed alpha
Helix 16
AB7
A
301 305Right-handed 310
Helix 17
AB8
A
308 321Right-handed alpha
Helix 18
AB9
A
334 336Right-handed 310
Helix 19
AC1
A
337 349Right-handed alpha
Helix 20
AC2
A
350 356Right-handed 310
Helix 21
AC3
A
359 366Right-handed alpha
Helix 22
AC4
A
367 372Right-handed 310
Helix 23
AC5
B
67 77Right-handed alpha
Helix 24
AC6
B
79 84Right-handed 310
Helix 25
AC7
C
55 61Right-handed alpha
Helix 26
AC8
C
78 92Right-handed alpha
Helix 27
AC9
C
97 101Right-handed 310
Helix 28
AD1
C
112 126Right-handed alpha
Helix 29
AD2
C
137 145Right-handed alpha
Helix 30
AD3
C
172 175Right-handed 310
Helix 31
AD4
C
181 193Right-handed alpha
Helix 32
AD5
C
194 197Right-handed 310
Helix 33
AD6
C
202 217Right-handed alpha
Helix 34
AD7
C
222 233Right-handed alpha
Helix 35
AD8
C
252 260Right-handed alpha
Helix 36
AD9
C
261 262Right-handed 310
Helix 37
AE1
C
263 268Right-handed 310
Helix 38
AE2
C
273 284Right-handed alpha
Helix 39
AE3
C
286 295Right-handed alpha
Helix 40
AE4
C
301 305Right-handed 310
Helix 41
AE5
C
308 321Right-handed alpha
Helix 42
AE6
C
337 349Right-handed alpha
Helix 43
AE7
C
350 356Right-handed 310
Helix 44
AE8
C
359 366Right-handed alpha
Helix 45
AE9
C
367 372Right-handed 310
Helix 46
AF1
D
67 77Right-handed alpha
Helix 47
AF2
D
79 84Right-handed 310
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There are 10 sheets in PDB entry 5YPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
297 300parallel
Strand 5
A
329 330parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
16 21anti-parallel
Strand 3
C
8 12anti-parallel
Strand 4
C
103 107parallel
Strand 5
C
131 136parallel
Strand 6
C
357 358anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
75 76anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
176 178anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
150 155anti-parallel
Strand 4
C
297 300parallel
Strand 5
C
329 330parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 241first strand
Strand 2
C
247 250anti-parallel
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