Analysis of interatomic Contacts of Structural Units in PDB entry:
5YPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YPV entry

There is 1 chain in PDB entry 5YPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11ALA 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5YPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 37Right-handed alpha
Helix 2
AA2
A
37 52Right-handed alpha
Helix 3
AA3
A
54 62Right-handed alpha
Helix 4
AA4
A
67 89Right-handed alpha
Helix 5
AA5
A
101 111Right-handed alpha
Helix 6
AA6
A
115 132Right-handed alpha
Helix 7
AA7
A
148 162Right-handed alpha
Helix 8
AA8
A
184 197Right-handed alpha
Helix 9
AA9
A
212 214Right-handed 310
Helix 10
AB1
A
215 228Right-handed alpha
Helix 11
AB2
A
249 261Right-handed alpha
Helix 12
AB3
A
267 276Right-handed alpha
Helix 13
AB4
A
289 294Right-handed alpha
Helix 14
AB5
A
309 324Right-handed alpha
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There are 2 sheets in PDB entry 5YPV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
96 99parallel
Strand 3
A
15 19parallel
Strand 4
A
281 284parallel
Strand 5
A
303 306parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
139 145anti-parallel
Strand 3
A
177 183anti-parallel
Strand 4
A
167 174anti-parallel
Strand 5
A
265 266parallel
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