Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YQ0 entry

There are 8 chains in PDB entry 5YQ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 23	ASP 326
B	ILE 23	ASP 326
C	ILE 23	ASP 326
D	ILE 23	ASP 326
E	ILE 23	ASP 326
F	ILE 23	ASP 326
G	ILE 23	ASP 326
H	ILE 23	ASP 326

There are 64 helices in PDB entry 5YQ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	77	Right-handed alpha
Helix 2	AA2	A	125	128	Right-handed 310
Helix 3	AA3	A	168	172	Right-handed 310
Helix 4	AA4	A	174	185	Right-handed alpha
Helix 5	AA5	A	192	196	Right-handed alpha
Helix 6	AA6	A	255	260	Right-handed 310
Helix 7	AA7	A	279	281	Right-handed 310
Helix 8	AA8	A	316	323	Right-handed alpha
Helix 9	AA9	B	72	76	Right-handed 310
Helix 10	AB1	B	168	172	Right-handed 310
Helix 11	AB2	B	174	185	Right-handed alpha
Helix 12	AB3	B	192	197	Right-handed alpha
Helix 13	AB4	B	255	260	Right-handed 310
Helix 14	AB5	B	279	281	Right-handed 310
Helix 15	AB6	B	316	323	Right-handed alpha
Helix 16	AB7	C	72	76	Right-handed 310
Helix 17	AB8	C	125	128	Right-handed 310
Helix 18	AB9	C	168	172	Right-handed 310
Helix 19	AC1	C	174	185	Right-handed alpha
Helix 20	AC2	C	192	196	Right-handed alpha
Helix 21	AC3	C	255	260	Right-handed 310
Helix 22	AC4	C	279	281	Right-handed 310
Helix 23	AC5	C	297	299	Right-handed 310
Helix 24	AC6	C	316	323	Right-handed alpha
Helix 25	AC7	D	72	76	Right-handed 310
Helix 26	AC8	D	125	128	Right-handed 310
Helix 27	AC9	D	168	172	Right-handed 310
Helix 28	AD1	D	174	185	Right-handed alpha
Helix 29	AD2	D	192	196	Right-handed alpha
Helix 30	AD3	D	255	260	Right-handed 310
Helix 31	AD4	D	279	281	Right-handed 310
Helix 32	AD5	D	316	323	Right-handed alpha
Helix 33	AD6	E	72	76	Right-handed 310
Helix 34	AD7	E	125	128	Right-handed 310
Helix 35	AD8	E	168	172	Right-handed 310
Helix 36	AD9	E	174	185	Right-handed alpha
Helix 37	AE1	E	192	196	Right-handed alpha
Helix 38	AE2	E	255	260	Right-handed 310
Helix 39	AE3	E	279	281	Right-handed 310
Helix 40	AE4	E	316	323	Right-handed alpha
Helix 41	AE5	F	72	76	Right-handed 310
Helix 42	AE6	F	168	172	Right-handed 310
Helix 43	AE7	F	174	185	Right-handed alpha
Helix 44	AE8	F	192	196	Right-handed alpha
Helix 45	AE9	F	255	260	Right-handed 310
Helix 46	AF1	F	279	281	Right-handed 310
Helix 47	AF2	F	296	299	Right-handed 310
Helix 48	AF3	F	316	323	Right-handed alpha
Helix 49	AF4	G	72	77	Right-handed alpha
Helix 50	AF5	G	125	128	Right-handed 310
Helix 51	AF6	G	168	172	Right-handed 310
Helix 52	AF7	G	174	185	Right-handed alpha
Helix 53	AF8	G	192	196	Right-handed alpha
Helix 54	AF9	G	255	260	Right-handed 310
Helix 55	AG1	G	279	281	Right-handed 310
Helix 56	AG2	G	316	323	Right-handed alpha
Helix 57	AG3	H	72	76	Right-handed 310
Helix 58	AG4	H	168	172	Right-handed 310
Helix 59	AG5	H	174	185	Right-handed alpha
Helix 60	AG6	H	192	196	Right-handed alpha
Helix 61	AG7	H	255	260	Right-handed 310
Helix 62	AG8	H	279	281	Right-handed 310
Helix 63	AG9	H	297	299	Right-handed 310
Helix 64	AH1	H	316	324	Right-handed alpha

There are 40 sheets in PDB entry 5YQ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	34	40	anti-parallel
Strand 3	A	283	296	parallel
Strand 4	A	301	312	anti-parallel
Strand 5	A	244	253	parallel
Strand 6	A	235	240	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	52	55	anti-parallel
Strand 3	A	59	63	anti-parallel
Strand 4	A	68	69	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	81	89	anti-parallel
Strand 4	A	154	163	anti-parallel
Strand 5	A	211	218	anti-parallel
Strand 6	A	227	233	anti-parallel
Strand 7	A	272	277	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	113	114	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	268	270	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	34	40	anti-parallel
Strand 3	B	283	296	parallel
Strand 4	B	301	312	anti-parallel
Strand 5	B	244	253	parallel
Strand 6	B	235	240	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	52	55	anti-parallel
Strand 3	B	59	63	anti-parallel
Strand 4	B	68	69	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	81	89	anti-parallel
Strand 4	B	154	163	anti-parallel
Strand 5	B	211	218	anti-parallel
Strand 6	B	227	233	anti-parallel
Strand 7	B	272	277	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	113	114	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	268	270	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	34	40	anti-parallel
Strand 3	C	283	296	parallel
Strand 4	C	301	312	anti-parallel
Strand 5	C	244	253	parallel
Strand 6	C	235	240	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	53	55	anti-parallel
Strand 3	C	59	63	anti-parallel
Strand 4	C	68	69	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	81	89	anti-parallel
Strand 4	C	154	163	anti-parallel
Strand 5	C	211	218	anti-parallel
Strand 6	C	227	233	anti-parallel
Strand 7	C	272	277	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	113	114	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	191	first strand
Strand 2	C	268	270	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	148	first strand
Strand 2	D	34	40	anti-parallel
Strand 3	D	283	296	parallel
Strand 4	D	301	312	anti-parallel
Strand 5	D	244	253	parallel
Strand 6	D	235	240	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	53	55	anti-parallel
Strand 3	D	59	63	anti-parallel
Strand 4	D	68	69	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	123	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	81	89	anti-parallel
Strand 4	D	154	163	anti-parallel
Strand 5	D	211	218	anti-parallel
Strand 6	D	227	233	anti-parallel
Strand 7	D	272	277	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	113	114	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	191	first strand
Strand 2	D	268	270	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	148	first strand
Strand 2	E	34	40	anti-parallel
Strand 3	E	283	296	parallel
Strand 4	E	301	312	anti-parallel
Strand 5	E	244	253	parallel
Strand 6	E	235	240	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	46	first strand
Strand 2	E	52	55	anti-parallel
Strand 3	E	59	63	anti-parallel
Strand 4	E	68	69	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	123	first strand
Strand 2	E	131	136	anti-parallel
Strand 3	E	81	89	anti-parallel
Strand 4	E	154	163	anti-parallel
Strand 5	E	211	218	anti-parallel
Strand 6	E	227	233	anti-parallel
Strand 7	E	272	277	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	107	first strand
Strand 2	E	113	114	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	191	first strand
Strand 2	E	268	270	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	148	first strand
Strand 2	F	34	40	anti-parallel
Strand 3	F	283	292	parallel
Strand 4	F	301	312	anti-parallel
Strand 5	F	244	253	parallel
Strand 6	F	235	240	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	45	first strand
Strand 2	F	53	55	anti-parallel
Strand 3	F	59	63	anti-parallel
Strand 4	F	68	69	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	123	first strand
Strand 2	F	131	136	anti-parallel
Strand 3	F	81	89	anti-parallel
Strand 4	F	154	163	anti-parallel
Strand 5	F	211	218	anti-parallel
Strand 6	F	227	233	anti-parallel
Strand 7	F	272	277	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	107	first strand
Strand 2	F	113	114	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	191	first strand
Strand 2	F	268	270	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	148	first strand
Strand 2	G	34	40	anti-parallel
Strand 3	G	283	296	parallel
Strand 4	G	301	312	anti-parallel
Strand 5	G	244	253	parallel
Strand 6	G	235	240	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	46	first strand
Strand 2	G	52	55	anti-parallel
Strand 3	G	59	63	anti-parallel
Strand 4	G	68	69	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	123	first strand
Strand 2	G	131	136	anti-parallel
Strand 3	G	81	89	anti-parallel
Strand 4	G	154	163	anti-parallel
Strand 5	G	211	218	anti-parallel
Strand 6	G	227	233	anti-parallel
Strand 7	G	272	277	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	107	first strand
Strand 2	G	113	114	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	191	first strand
Strand 2	G	268	270	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	148	first strand
Strand 2	H	34	40	anti-parallel
Strand 3	H	283	296	parallel
Strand 4	H	301	312	anti-parallel
Strand 5	H	244	253	parallel
Strand 6	H	235	240	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	46	first strand
Strand 2	H	52	55	anti-parallel
Strand 3	H	59	63	anti-parallel
Strand 4	H	68	69	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	123	first strand
Strand 2	H	131	136	anti-parallel
Strand 3	H	81	89	anti-parallel
Strand 4	H	154	163	anti-parallel
Strand 5	H	211	218	anti-parallel
Strand 6	H	227	233	anti-parallel
Strand 7	H	272	277	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	107	first strand
Strand 2	H	113	114	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	189	191	first strand
Strand 2	H	268	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YQ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQ0