Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YQ5 entry

There are 4 chains in PDB entry 5YQ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 64GLN 365
B
 THR 59GLU 364
C
 CYS 62GLN 365
D
 GLY 61GLN 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5YQ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 112Right-handed 310
Helix 2
AA2
A
128 132Right-handed 310
Helix 3
AA3
A
199 204Right-handed alpha
Helix 4
AA4
A
251 256Right-handed 310
Helix 5
AA5
A
316 321Right-handed alpha
Helix 6
AA6
A
349 354Right-handed alpha
Helix 7
AA7
B
107 112Right-handed alpha
Helix 8
AA8
B
128 132Right-handed 310
Helix 9
AA9
B
199 204Right-handed alpha
Helix 10
AB1
B
251 256Right-handed 310
Helix 11
AB2
B
316 321Right-handed alpha
Helix 12
AB3
B
349 354Right-handed alpha
Helix 13
AB4
C
107 112Right-handed alpha
Helix 14
AB5
C
128 132Right-handed 310
Helix 15
AB6
C
199 204Right-handed alpha
Helix 16
AB7
C
251 256Right-handed 310
Helix 17
AB8
C
316 321Right-handed alpha
Helix 18
AB9
C
349 354Right-handed alpha
Helix 19
AC1
D
107 112Right-handed alpha
Helix 20
AC2
D
128 132Right-handed 310
Helix 21
AC3
D
199 204Right-handed alpha
Helix 22
AC4
D
251 256Right-handed 310
Helix 23
AC5
D
316 321Right-handed alpha
Helix 24
AC6
D
349 354Right-handed alpha
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There are 4 sheets in PDB entry 5YQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
95 97parallel
Strand 3
A
119 121parallel
Strand 4
A
145 147parallel
Strand 5
A
166 168parallel
Strand 6
A
190 192parallel
Strand 7
A
216 218parallel
Strand 8
A
237 239parallel
Strand 9
A
261 263parallel
Strand 10
A
284 286parallel
Strand 11
A
304 306parallel
Strand 12
A
334 336parallel
Strand 13
A
359 361parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
95 97parallel
Strand 3
B
119 121parallel
Strand 4
B
145 147parallel
Strand 5
B
166 168parallel
Strand 6
B
190 192parallel
Strand 7
B
216 218parallel
Strand 8
B
237 239parallel
Strand 9
B
261 263parallel
Strand 10
B
284 286parallel
Strand 11
B
304 306parallel
Strand 12
B
334 336parallel
Strand 13
B
359 361parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 77first strand
Strand 2
C
95 97parallel
Strand 3
C
119 121parallel
Strand 4
C
145 147parallel
Strand 5
C
166 168parallel
Strand 6
C
190 192parallel
Strand 7
C
216 218parallel
Strand 8
C
237 239parallel
Strand 9
C
261 263parallel
Strand 10
C
284 286parallel
Strand 11
C
304 306parallel
Strand 12
C
334 336parallel
Strand 13
C
359 361parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 77first strand
Strand 2
D
95 97parallel
Strand 3
D
119 121parallel
Strand 4
D
145 147parallel
Strand 5
D
166 168parallel
Strand 6
D
190 192parallel
Strand 7
D
216 218parallel
Strand 8
D
237 239parallel
Strand 9
D
261 263parallel
Strand 10
D
284 286parallel
Strand 11
D
304 306parallel
Strand 12
D
334 336parallel
Strand 13
D
359 361parallel
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