Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YQ7 entry

There are 35 chains in PDB entry 5YQ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 PRO 11ILE 54
B
 PRO 11ILE 54
0
 PRO 11ILE 54
L
 SER 2GLN 310
8
 PRO 11ILE 54
6
 PRO 11ILE 54
4
 PRO 11ILE 54
2
 PRO 11ILE 54
K
 PRO 11ILE 54
C
 ARG 17PRO 309
I
 PRO 11ILE 54
G
 PRO 11ILE 54
W
 PRO 11ILE 54
U
 PRO 11ILE 54
T
 PRO 5ARG 40
S
 PRO 11ILE 54
Q
 PRO 11ILE 54
O
 PRO 11ILE 54
V
 PRO 5ARG 40
R
 PRO 5ARG 40
P
 PRO 5ARG 40
N
 PRO 5ARG 40
J
 PRO 5ARG 40
H
 PRO 5ARG 40
F
 PRO 5ARG 40
D
 PRO 5ARG 40
A
 PRO 5ARG 40
9
 PRO 5ARG 40
7
 PRO 5ARG 40
5
 PRO 5ARG 40
3
 PRO 5ARG 40
1
 PRO 5ARG 40
Y
 UNK 1UNK 25
X
 UNK 1UNK 23
M
 ILE 336PHE 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 68 helices in PDB entry 5YQ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
22 51Right-handed alpha
Helix 2
AA2
B
22 51Right-handed alpha
Helix 3
AA3
0
22 51Right-handed alpha
Helix 4
AA4
L
8 29Right-handed alpha
Helix 5
AA5
L
30 33Right-handed 310
Helix 6
AA6
L
38 45Right-handed alpha
Helix 7
AA7
L
72 93Right-handed alpha
Helix 8
AA8
L
123 150Right-handed alpha
Helix 9
AA9
L
154 172Right-handed alpha
Helix 10
AB1
L
173 178Right-handed alpha
Helix 11
AB2
L
191 203Right-handed alpha
Helix 12
AB3
L
213 234Right-handed alpha
Helix 13
AB4
L
245 252Right-handed alpha
Helix 14
AB5
L
262 284Right-handed alpha
Helix 15
AB6
L
293 297Right-handed 310
Helix 16
AB7
L
302 306Right-handed 310
Helix 17
AB8
8
22 48Right-handed alpha
Helix 18
AB9
6
22 51Right-handed alpha
Helix 19
AC1
4
22 47Right-handed alpha
Helix 20
AC2
4
48 51Right-handed 310
Helix 21
AC3
2
22 48Right-handed alpha
Helix 22
AC4
K
22 47Right-handed alpha
Helix 23
AC5
C
22 35Right-handed alpha
Helix 24
AC6
C
37 47Right-handed alpha
Helix 25
AC7
C
55 59Right-handed 310
Helix 26
AC8
C
72 79Right-handed 310
Helix 27
AC9
C
80 85Right-handed alpha
Helix 28
AD1
C
98 110Right-handed alpha
Helix 29
AD2
C
135 153Right-handed alpha
Helix 30
AD3
C
154 157Right-handed 310
Helix 31
AD4
C
219 236Right-handed alpha
Helix 32
AD5
C
260 275Right-handed alpha
Helix 33
AD6
I
22 48Right-handed alpha
Helix 34
AD7
G
22 47Right-handed alpha
Helix 35
AD8
W
22 48Right-handed alpha
Helix 36
AD9
U
22 48Right-handed alpha
Helix 37
AE1
T
8 34Right-handed alpha
Helix 38
AE2
S
22 51Right-handed alpha
Helix 39
AE3
Q
22 48Right-handed alpha
Helix 40
AE4
O
22 47Right-handed alpha
Helix 41
AE5
V
8 32Right-handed alpha
Helix 42
AE6
R
8 33Right-handed alpha
Helix 43
AE7
P
8 34Right-handed alpha
Helix 44
AE8
N
10 34Right-handed alpha
Helix 45
AE9
J
8 34Right-handed alpha
Helix 46
AF1
H
7 33Right-handed alpha
Helix 47
AF2
F
8 29Right-handed alpha
Helix 48
AF3
D
8 30Right-handed alpha
Helix 49
AF4
A
9 30Right-handed alpha
Helix 50
AF5
9
8 34Right-handed alpha
Helix 51
AF6
7
12 33Right-handed alpha
Helix 52
AF7
5
8 34Right-handed alpha
Helix 53
AF8
3
8 34Right-handed alpha
Helix 54
AF9
1
7 31Right-handed alpha
Helix 55
AG1
Y
2 6Right-handed 310
Helix 56
AG2
Y
7 23Right-handed alpha
Helix 57
AG3
X
2 23Right-handed alpha
Helix 58
AG4
M
361 366Right-handed alpha
Helix 59
AG5
M
379 398Right-handed alpha
Helix 60
AG6
M
404 411Right-handed alpha
Helix 61
AG7
M
438 463Right-handed alpha
Helix 62
AG8
M
468 485Right-handed alpha
Helix 63
AG9
M
504 517Right-handed alpha
Helix 64
AH1
M
518 521Right-handed 310
Helix 65
AH2
M
522 550Right-handed alpha
Helix 66
AH3
M
565 577Right-handed alpha
Helix 67
AH4
M
587 610Right-handed alpha
Helix 68
AH5
M
619 623Right-handed 310
Back to top of page
There are no sheets in PDB entry 5YQ7
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il