Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YQG entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 5YQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 0THR 234
B
 MET 1ASP 236
C
 PHE 0ASP 236
D
 MET 1THR 234
E
 ARG 262GLY 264
E
 PHE 266LEU 283
E
 LEU 285ILE 287
F
 GLN 263GLY 264
F
 PHE 266LEU 283
F
 LEU 285ARG 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5YQG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
19 33Right-handed alpha
Helix 3
AA3
A
38 67Right-handed alpha
Helix 4
AA4
A
76 107Right-handed alpha
Helix 5
AA5
A
116 138Right-handed alpha
Helix 6
AA6
A
139 165Right-handed alpha
Helix 7
AA7
A
169 186Right-handed alpha
Helix 8
AA8
A
189 208Right-handed alpha
Helix 9
AA9
A
217 233Right-handed alpha
Helix 10
AB1
B
2 17Right-handed alpha
Helix 11
AB2
B
19 33Right-handed alpha
Helix 12
AB3
B
38 73Right-handed alpha
Helix 13
AB4
B
75 107Right-handed alpha
Helix 14
AB5
B
116 138Right-handed alpha
Helix 15
AB6
B
139 165Right-handed alpha
Helix 16
AB7
B
169 186Right-handed alpha
Helix 17
AB8
B
189 206Right-handed alpha
Helix 18
AB9
B
207 211Right-handed 310
Helix 19
AC1
B
212 236Right-handed alpha
Helix 20
AC2
C
2 17Right-handed alpha
Helix 21
AC3
C
19 33Right-handed alpha
Helix 22
AC4
C
38 73Right-handed alpha
Helix 23
AC5
C
75 107Right-handed alpha
Helix 24
AC6
C
116 138Right-handed alpha
Helix 25
AC7
C
139 165Right-handed alpha
Helix 26
AC8
C
169 186Right-handed alpha
Helix 27
AC9
C
189 206Right-handed alpha
Helix 28
AD1
C
207 211Right-handed 310
Helix 29
AD2
C
212 236Right-handed alpha
Helix 30
AD3
D
2 17Right-handed alpha
Helix 31
AD4
D
19 32Right-handed alpha
Helix 32
AD5
D
38 71Right-handed alpha
Helix 33
AD6
D
76 107Right-handed alpha
Helix 34
AD7
D
116 136Right-handed alpha
Helix 35
AD8
D
139 165Right-handed alpha
Helix 36
AD9
D
169 186Right-handed alpha
Helix 37
AE1
D
189 206Right-handed alpha
Helix 38
AE2
D
215 234Right-handed alpha
Helix 39
AE3
F
273 280Right-handed 310
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There are no sheets in PDB entry 5YQG
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