Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YQH entry

There are 4 chains in PDB entry 5YQH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 17	ALA 409
B	THR 17	ALA 409
C	THR 17	ALA 409
D	THR 17	ALA 409

There are 74 helices in PDB entry 5YQH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	33	Right-handed alpha
Helix 2	AA2	A	34	44	Right-handed alpha
Helix 3	AA3	A	60	69	Right-handed alpha
Helix 4	AA4	A	105	116	Right-handed alpha
Helix 5	AA5	A	117	141	Right-handed alpha
Helix 6	AA6	A	153	165	Right-handed alpha
Helix 7	AA7	A	170	172	Right-handed 310
Helix 8	AA8	A	173	184	Right-handed alpha
Helix 9	AA9	A	189	198	Right-handed alpha
Helix 10	AB1	A	199	210	Right-handed alpha
Helix 11	AB2	A	211	215	Right-handed 310
Helix 12	AB3	A	219	227	Right-handed alpha
Helix 13	AB4	A	236	249	Right-handed alpha
Helix 14	AB5	A	250	267	Right-handed alpha
Helix 15	AB6	A	267	277	Right-handed alpha
Helix 16	AB7	A	280	293	Right-handed alpha
Helix 17	AB8	A	323	327	Right-handed alpha
Helix 18	AB9	A	360	378	Right-handed alpha
Helix 19	AC1	B	27	33	Right-handed alpha
Helix 20	AC2	B	33	45	Right-handed alpha
Helix 21	AC3	B	60	69	Right-handed alpha
Helix 22	AC4	B	105	116	Right-handed alpha
Helix 23	AC5	B	117	141	Right-handed alpha
Helix 24	AC6	B	153	165	Right-handed alpha
Helix 25	AC7	B	170	172	Right-handed 310
Helix 26	AC8	B	173	184	Right-handed alpha
Helix 27	AC9	B	189	198	Right-handed alpha
Helix 28	AD1	B	199	210	Right-handed alpha
Helix 29	AD2	B	211	215	Right-handed 310
Helix 30	AD3	B	219	230	Right-handed alpha
Helix 31	AD4	B	236	249	Right-handed alpha
Helix 32	AD5	B	250	267	Right-handed alpha
Helix 33	AD6	B	267	277	Right-handed alpha
Helix 34	AD7	B	280	293	Right-handed alpha
Helix 35	AD8	B	323	327	Right-handed alpha
Helix 36	AD9	B	360	378	Right-handed alpha
Helix 37	AE1	C	27	33	Right-handed alpha
Helix 38	AE2	C	34	45	Right-handed alpha
Helix 39	AE3	C	60	69	Right-handed alpha
Helix 40	AE4	C	105	116	Right-handed alpha
Helix 41	AE5	C	117	143	Right-handed alpha
Helix 42	AE6	C	153	165	Right-handed alpha
Helix 43	AE7	C	170	172	Right-handed 310
Helix 44	AE8	C	173	185	Right-handed alpha
Helix 45	AE9	C	189	198	Right-handed alpha
Helix 46	AF1	C	199	210	Right-handed alpha
Helix 47	AF2	C	211	215	Right-handed 310
Helix 48	AF3	C	219	227	Right-handed alpha
Helix 49	AF4	C	236	250	Right-handed alpha
Helix 50	AF5	C	250	267	Right-handed alpha
Helix 51	AF6	C	267	277	Right-handed alpha
Helix 52	AF7	C	280	293	Right-handed alpha
Helix 53	AF8	C	323	328	Right-handed alpha
Helix 54	AF9	C	360	378	Right-handed alpha
Helix 55	AG1	D	27	33	Right-handed alpha
Helix 56	AG2	D	34	45	Right-handed alpha
Helix 57	AG3	D	60	69	Right-handed alpha
Helix 58	AG4	D	105	116	Right-handed alpha
Helix 59	AG5	D	117	123	Right-handed alpha
Helix 60	AG6	D	124	143	Right-handed alpha
Helix 61	AG7	D	153	165	Right-handed alpha
Helix 62	AG8	D	170	172	Right-handed 310
Helix 63	AG9	D	173	185	Right-handed alpha
Helix 64	AH1	D	189	198	Right-handed alpha
Helix 65	AH2	D	199	210	Right-handed alpha
Helix 66	AH3	D	211	215	Right-handed 310
Helix 67	AH4	D	219	230	Right-handed alpha
Helix 68	AH5	D	236	250	Right-handed alpha
Helix 69	AH6	D	250	267	Right-handed alpha
Helix 70	AH7	D	267	277	Right-handed alpha
Helix 71	AH8	D	280	293	Right-handed alpha
Helix 72	AH9	D	323	327	Right-handed alpha
Helix 73	AI1	D	353	357	Right-handed 310
Helix 74	AI2	D	360	378	Right-handed alpha

There are 16 sheets in PDB entry 5YQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	48	50	parallel
Strand 3	A	55	58	anti-parallel
Strand 4	A	318	322	parallel
Strand 5	A	297	302	anti-parallel
Strand 6	A	74	75	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	403	408	anti-parallel
Strand 3	A	379	384	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	311	313	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	398	401	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	48	50	parallel
Strand 3	B	55	58	anti-parallel
Strand 4	B	318	322	parallel
Strand 5	B	297	302	anti-parallel
Strand 6	B	74	75	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	403	408	anti-parallel
Strand 3	B	379	384	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	308	first strand
Strand 2	B	311	313	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	391	first strand
Strand 2	B	398	401	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	48	50	parallel
Strand 3	C	55	58	anti-parallel
Strand 4	C	318	322	parallel
Strand 5	C	297	302	anti-parallel
Strand 6	C	74	75	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	403	408	anti-parallel
Strand 3	C	379	384	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	308	first strand
Strand 2	C	311	313	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	391	first strand
Strand 2	C	398	401	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	48	50	parallel
Strand 3	D	55	58	anti-parallel
Strand 4	D	318	322	parallel
Strand 5	D	297	302	anti-parallel
Strand 6	D	74	75	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	403	408	anti-parallel
Strand 3	D	379	384	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	308	first strand
Strand 2	D	311	313	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	391	first strand
Strand 2	D	398	401	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YQH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQH