Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YQJ entry

There are 3 chains in PDB entry 5YQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 751THR 927
B
 VAL 752SER 929
C
 VAL 752THR 927
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5YQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
770 780Right-handed alpha
Helix 2
AA2
A
783 793Right-handed alpha
Helix 3
AA3
A
899 927Right-handed alpha
Helix 4
AA4
B
770 780Right-handed alpha
Helix 5
AA5
B
783 793Right-handed alpha
Helix 6
AA6
B
899 927Right-handed alpha
Helix 7
AA7
C
770 780Right-handed alpha
Helix 8
AA8
C
783 793Right-handed alpha
Helix 9
AA9
C
863 865Right-handed 310
Helix 10
AB1
C
899 927Right-handed alpha
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There are 3 sheets in PDB entry 5YQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 767first strand
Strand 2
A
883 893anti-parallel
Strand 3
A
867 877anti-parallel
Strand 4
A
849 857anti-parallel
Strand 5
A
829 845anti-parallel
Strand 6
A
815 826anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
760 767first strand
Strand 2
B
883 893anti-parallel
Strand 3
B
867 877anti-parallel
Strand 4
B
849 857anti-parallel
Strand 5
B
829 845anti-parallel
Strand 6
B
815 826anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
760 767first strand
Strand 2
C
883 893anti-parallel
Strand 3
C
867 877anti-parallel
Strand 4
C
849 857anti-parallel
Strand 5
C
830 845anti-parallel
Strand 6
C
815 825anti-parallel
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