Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YQP entry

There are 2 chains in PDB entry 5YQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 953ARG 1137
B
 SER 953ARG 1137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5YQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
980 990Right-handed alpha
Helix 2
AA2
A
993 1002Right-handed alpha
Helix 3
AA3
A
1072 1074Right-handed 310
Helix 4
AA4
A
1108 1137Right-handed alpha
Helix 5
AA5
B
980 990Right-handed alpha
Helix 6
AA6
B
993 1002Right-handed alpha
Helix 7
AA7
B
1072 1074Right-handed 310
Helix 8
AA8
B
1088 1090Right-handed 310
Helix 9
AA9
B
1108 1137Right-handed alpha
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There are 2 sheets in PDB entry 5YQP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
969 977first strand
Strand 2
A
1092 1102anti-parallel
Strand 3
A
1076 1086anti-parallel
Strand 4
A
1058 1066anti-parallel
Strand 5
A
1041 1053anti-parallel
Strand 6
A
1024 1032anti-parallel
Strand 7
A
1006 1007anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
969 977first strand
Strand 2
B
1092 1102anti-parallel
Strand 3
B
1076 1086anti-parallel
Strand 4
B
1058 1066anti-parallel
Strand 5
B
1041 1053anti-parallel
Strand 6
B
1024 1032anti-parallel
Strand 7
B
1006 1007anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il