Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YQQ entry

There are 2 chains in PDB entry 5YQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1057ASN 1223
B
 SER 1059ASN 1223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5YQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1072 1082Right-handed alpha
Helix 2
AA2
A
1085 1095Right-handed alpha
Helix 3
AA3
A
1158 1160Right-handed 310
Helix 4
AA4
A
1192 1222Right-handed alpha
Helix 5
AA5
B
1072 1082Right-handed alpha
Helix 6
AA6
B
1085 1094Right-handed alpha
Helix 7
AA7
B
1192 1223Right-handed alpha
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There are 2 sheets in PDB entry 5YQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1061 1069first strand
Strand 2
A
1177 1188anti-parallel
Strand 3
A
1162 1173anti-parallel
Strand 4
A
1144 1152anti-parallel
Strand 5
A
1128 1140anti-parallel
Strand 6
A
1110 1117anti-parallel
Strand 7
A
1097 1098anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1061 1069first strand
Strand 2
B
1177 1188anti-parallel
Strand 3
B
1162 1173anti-parallel
Strand 4
B
1144 1152anti-parallel
Strand 5
B
1128 1140anti-parallel
Strand 6
B
1110 1117anti-parallel
Strand 7
B
1097 1098anti-parallel
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