Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YQZ entry

There are 2 chains in PDB entry 5YQZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	GLN 27	GLU 426
P	SER 2	THR 29

There are 27 helices in PDB entry 5YQZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	27	49	Right-handed alpha
Helix 2	AA2	R	87	92	Right-handed alpha
Helix 3	AA3	R	118	122	Right-handed 310
Helix 4	AA4	R	124	166	Right-handed alpha
Helix 5	AA5	R	167	170	Right-handed 310
Helix 6	AA6	R	171	203	Right-handed alpha
Helix 7	AA7	R	208	217	Right-handed alpha
Helix 8	AA8	R	220	255	Right-handed alpha
Helix 9	AA9	R	1001	1010	Right-handed alpha
Helix 10	AB1	R	1037	1050	Right-handed alpha
Helix 11	AB2	R	1058	1080	Right-handed alpha
Helix 12	AB3	R	1083	1089	Right-handed alpha
Helix 13	AB4	R	1091	1105	Right-handed alpha
Helix 14	AB5	R	1106	1111	Right-handed alpha
Helix 15	AB6	R	1113	1122	Right-handed alpha
Helix 16	AB7	R	1124	1133	Right-handed alpha
Helix 17	AB8	R	1135	1141	Right-handed alpha
Helix 18	AB9	R	1141	1155	Right-handed alpha
Helix 19	AC1	R	1156	260	Right-handed 310
Helix 20	AC2	R	263	272	Right-handed alpha
Helix 21	AC3	R	272	290	Right-handed alpha
Helix 22	AC4	R	304	335	Right-handed alpha
Helix 23	AC5	R	342	369	Right-handed alpha
Helix 24	AC6	R	375	391	Right-handed alpha
Helix 25	AC7	R	391	401	Right-handed alpha
Helix 26	AC8	R	404	425	Right-handed alpha
Helix 27	AC9	P	3	29	Right-handed alpha

There are 4 sheets in PDB entry 5YQZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	57	58	first strand
Strand 2	R	71	72	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	61	62	first strand
Strand 2	R	67	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	76	80	first strand
Strand 2	R	95	99	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	1017	1018	first strand
Strand 2	R	1024	1026	anti-parallel
Strand 3	R	1030	1033	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YQZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YQZ