Analysis of interatomic Contacts of Structural Units in PDB entry:
5YR2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YR2 entry

There are 4 chains in PDB entry 5YR2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LEU 161
A
 VAL 165ASN 241
B
 ASN 2LEU 161
B
 VAL 165ASN 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5YR2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 15Right-handed 310
Helix 2
AA2
A
100 106Right-handed 310
Helix 3
AA3
A
153 158Right-handed 310
Helix 4
AA4
A
165 169Right-handed 310
Helix 5
AA5
A
172 178Right-handed 310
Helix 6
AA6
A
179 184Right-handed alpha
Helix 7
AA7
B
100 106Right-handed 310
Helix 8
AA8
B
153 158Right-handed 310
Helix 9
AA9
B
165 169Right-handed 310
Helix 10
AB1
B
172 178Right-handed 310
Helix 11
AB2
B
179 184Right-handed alpha
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There are 2 sheets in PDB entry 5YR2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 11first strand
Strand 2
A
16 26anti-parallel
Strand 3
A
32 43anti-parallel
Strand 4
A
189 197anti-parallel
Strand 5
A
202 212anti-parallel
Strand 6
A
215 225anti-parallel
Strand 7
A
108 119parallel
Strand 8
A
122 133anti-parallel
Strand 9
A
138 145anti-parallel
Strand 10
A
73 83anti-parallel
Strand 11
A
55 64anti-parallel
Strand 12
A
3 11anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 11first strand
Strand 2
B
16 26anti-parallel
Strand 3
B
32 43anti-parallel
Strand 4
B
189 197anti-parallel
Strand 5
B
202 212anti-parallel
Strand 6
B
215 225anti-parallel
Strand 7
B
108 119parallel
Strand 8
B
122 133anti-parallel
Strand 9
B
138 145anti-parallel
Strand 10
B
73 83anti-parallel
Strand 11
B
55 64anti-parallel
Strand 12
B
3 11anti-parallel
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