Analysis of interatomic Contacts of Structural Units in PDB entry:
5YRN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YRN entry

There are 12 chains in PDB entry 5YRN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 430GLY 516
B
 THR 430GLY 516
C
 THR 430GLY 516
D
 THR 430GLY 516
E
 THR 430GLY 516
F
 THR 430GLY 516
G
 THR 430GLY 516
H
 THR 430GLY 516
I
 THR 430GLY 516
J
 THR 430GLY 516
K
 THR 430GLY 516
L
 THR 430GLY 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 5YRN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
430 443Right-handed alpha
Helix 2
AA2
A
444 451Right-handed alpha
Helix 3
AA3
A
452 466Right-handed alpha
Helix 4
AA4
A
470 479Right-handed alpha
Helix 5
AA5
A
482 497Right-handed alpha
Helix 6
AA6
A
499 512Right-handed alpha
Helix 7
AA7
B
431 443Right-handed alpha
Helix 8
AA8
B
444 451Right-handed alpha
Helix 9
AA9
B
452 466Right-handed alpha
Helix 10
AB1
B
470 479Right-handed alpha
Helix 11
AB2
B
482 497Right-handed alpha
Helix 12
AB3
B
499 512Right-handed alpha
Helix 13
AB4
C
431 443Right-handed alpha
Helix 14
AB5
C
444 451Right-handed alpha
Helix 15
AB6
C
452 466Right-handed alpha
Helix 16
AB7
C
470 479Right-handed alpha
Helix 17
AB8
C
482 497Right-handed alpha
Helix 18
AB9
C
499 512Right-handed alpha
Helix 19
AC1
D
431 443Right-handed alpha
Helix 20
AC2
D
444 451Right-handed alpha
Helix 21
AC3
D
452 466Right-handed alpha
Helix 22
AC4
D
470 479Right-handed alpha
Helix 23
AC5
D
482 497Right-handed alpha
Helix 24
AC6
D
499 512Right-handed alpha
Helix 25
AC7
E
431 443Right-handed alpha
Helix 26
AC8
E
444 451Right-handed alpha
Helix 27
AC9
E
452 466Right-handed alpha
Helix 28
AD1
E
470 479Right-handed alpha
Helix 29
AD2
E
482 497Right-handed alpha
Helix 30
AD3
E
499 512Right-handed alpha
Helix 31
AD4
F
431 443Right-handed alpha
Helix 32
AD5
F
444 451Right-handed alpha
Helix 33
AD6
F
452 466Right-handed alpha
Helix 34
AD7
F
470 479Right-handed alpha
Helix 35
AD8
F
482 497Right-handed alpha
Helix 36
AD9
F
499 512Right-handed alpha
Helix 37
AE1
G
431 443Right-handed alpha
Helix 38
AE2
G
444 451Right-handed alpha
Helix 39
AE3
G
452 466Right-handed alpha
Helix 40
AE4
G
470 479Right-handed alpha
Helix 41
AE5
G
482 497Right-handed alpha
Helix 42
AE6
G
499 512Right-handed alpha
Helix 43
AE7
H
431 443Right-handed alpha
Helix 44
AE8
H
444 451Right-handed alpha
Helix 45
AE9
H
452 466Right-handed alpha
Helix 46
AF1
H
470 479Right-handed alpha
Helix 47
AF2
H
482 497Right-handed alpha
Helix 48
AF3
H
499 512Right-handed alpha
Helix 49
AF4
I
431 443Right-handed alpha
Helix 50
AF5
I
444 451Right-handed alpha
Helix 51
AF6
I
452 466Right-handed alpha
Helix 52
AF7
I
470 479Right-handed alpha
Helix 53
AF8
I
482 497Right-handed alpha
Helix 54
AF9
I
499 512Right-handed alpha
Helix 55
AG1
J
431 443Right-handed alpha
Helix 56
AG2
J
444 451Right-handed alpha
Helix 57
AG3
J
452 466Right-handed alpha
Helix 58
AG4
J
470 479Right-handed alpha
Helix 59
AG5
J
482 497Right-handed alpha
Helix 60
AG6
J
499 512Right-handed alpha
Helix 61
AG7
K
431 443Right-handed alpha
Helix 62
AG8
K
444 451Right-handed alpha
Helix 63
AG9
K
452 466Right-handed alpha
Helix 64
AH1
K
470 479Right-handed alpha
Helix 65
AH2
K
482 497Right-handed alpha
Helix 66
AH3
K
499 512Right-handed alpha
Helix 67
AH4
L
431 443Right-handed alpha
Helix 68
AH5
L
444 451Right-handed alpha
Helix 69
AH6
L
452 466Right-handed alpha
Helix 70
AH7
L
470 479Right-handed alpha
Helix 71
AH8
L
482 497Right-handed alpha
Helix 72
AH9
L
499 512Right-handed alpha
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There are no sheets in PDB entry 5YRN
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