Analysis of interatomic Contacts of Structural Units in PDB entry:
5YRP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YRP entry

There are 2 chains in PDB entry 5YRP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 364PRO 606
B
 ILE 360PRO 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5YRP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
410 433Right-handed alpha
Helix 2
AA2
A
454 466Right-handed alpha
Helix 3
AA3
A
488 500Right-handed alpha
Helix 4
AA4
A
514 519Right-handed alpha
Helix 5
AA5
A
529 535Right-handed alpha
Helix 6
AA6
A
541 557Right-handed alpha
Helix 7
AA7
A
567 578Right-handed alpha
Helix 8
AA8
A
592 603Right-handed alpha
Helix 9
AA9
B
416 433Right-handed alpha
Helix 10
AB1
B
454 466Right-handed alpha
Helix 11
AB2
B
485 499Right-handed alpha
Helix 12
AB3
B
513 521Right-handed alpha
Helix 13
AB4
B
529 535Right-handed alpha
Helix 14
AB5
B
541 556Right-handed alpha
Helix 15
AB6
B
567 577Right-handed alpha
Helix 16
AB7
B
593 603Right-handed alpha
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There are 2 sheets in PDB entry 5YRP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 374first strand
Strand 2
A
380 388anti-parallel
Strand 3
A
440 445parallel
Strand 4
A
473 478parallel
Strand 5
A
501 508parallel
Strand 6
A
525 528parallel
Strand 7
A
559 562parallel
Strand 8
A
581 582parallel
Strand 9
A
366 374anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 592first strand
Strand 2
B
368 374anti-parallel
Strand 3
B
581 583anti-parallel
Strand 4
B
559 563parallel
Strand 5
B
525 528parallel
Strand 6
B
502 508parallel
Strand 7
B
473 478parallel
Strand 8
B
440 445parallel
Strand 9
B
380 386parallel
Strand 10
B
368 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il