Analysis of interatomic Contacts of Structural Units in PDB entry:
5YRQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YRQ entry

There are 4 chains in PDB entry 5YRQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9VAL 985
B
 ALA 2VAL 985
D
 ALA 2VAL 985
E
 ARG 9VAL 985
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5YRQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
882 899Right-handed alpha
Helix 2
AA2
A
904 920Right-handed alpha
Helix 3
AA3
A
923 938Right-handed alpha
Helix 4
AA4
A
949 962Right-handed alpha
Helix 5
AA5
A
963 968Right-handed 310
Helix 6
AA6
A
973 985Right-handed alpha
Helix 7
AA7
B
882 899Right-handed alpha
Helix 8
AA8
B
904 921Right-handed alpha
Helix 9
AA9
B
923 945Right-handed alpha
Helix 10
AB1
B
947 961Right-handed alpha
Helix 11
AB2
B
962 967Right-handed 310
Helix 12
AB3
B
976 982Right-handed alpha
Helix 13
AB4
D
882 899Right-handed alpha
Helix 14
AB5
D
904 921Right-handed alpha
Helix 15
AB6
D
923 945Right-handed alpha
Helix 16
AB7
D
947 961Right-handed alpha
Helix 17
AB8
D
962 968Right-handed 310
Helix 18
AB9
D
975 982Right-handed alpha
Helix 19
AC1
E
882 899Right-handed alpha
Helix 20
AC2
E
904 920Right-handed alpha
Helix 21
AC3
E
923 938Right-handed alpha
Helix 22
AC4
E
949 962Right-handed alpha
Helix 23
AC5
E
963 968Right-handed 310
Helix 24
AC6
E
973 985Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5YRQ.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 11first strand
Strand 2
D
3 11anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il