Analysis of interatomic Contacts of Structural Units in PDB entry:
5YRV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YRV entry

There are 4 chains in PDB entry 5YRV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 551
B	GLY 43	LEU 224
C	ALA 38	ASP 173
D	MET 1	MET 426

There are198 helices in PDB entry 5YRV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	11	Right-handed alpha
Helix 2	AA2	A	12	17	Right-handed 310
Helix 3	AA3	A	23	27	Right-handed 310
Helix 4	AA4	A	57	59	Right-handed 310
Helix 5	AA5	A	60	70	Right-handed alpha
Helix 6	AA6	A	72	74	Right-handed 310
Helix 7	AA7	A	75	82	Right-handed alpha
Helix 8	AA8	A	83	93	Right-handed alpha
Helix 9	AA9	A	97	106	Right-handed alpha
Helix 10	AB1	A	109	119	Right-handed alpha
Helix 11	AB2	A	121	133	Right-handed alpha
Helix 12	AB3	A	150	165	Right-handed alpha
Helix 13	AB4	A	175	177	Right-handed 310
Helix 14	AB5	A	178	194	Right-handed alpha
Helix 15	AB6	A	204	214	Right-handed alpha
Helix 16	AB7	A	228	235	Right-handed alpha
Helix 17	AB8	A	238	252	Right-handed alpha
Helix 18	AB9	A	263	268	Right-handed alpha
Helix 19	AC1	A	275	291	Right-handed alpha
Helix 20	AC2	A	299	303	Right-handed 310
Helix 21	AC3	A	305	309	Right-handed 310
Helix 22	AC4	A	311	326	Right-handed alpha
Helix 23	AC5	A	341	354	Right-handed alpha
Helix 24	AC6	A	368	372	Right-handed 310
Helix 25	AC7	A	380	382	Right-handed 310
Helix 26	AC8	A	383	395	Right-handed alpha
Helix 27	AC9	A	404	427	Right-handed alpha
Helix 28	AD1	A	432	442	Right-handed alpha
Helix 29	AD2	A	444	448	Right-handed 310
Helix 30	AD3	A	452	466	Right-handed alpha
Helix 31	AD4	A	469	480	Right-handed alpha
Helix 32	AD5	A	482	495	Right-handed alpha
Helix 33	AD6	A	499	503	Right-handed 310
Helix 34	AD7	A	534	543	Right-handed alpha
Helix 35	AD8	B	83	97	Right-handed alpha
Helix 36	AD9	B	112	124	Right-handed alpha
Helix 37	AE1	B	156	160	Right-handed 310
Helix 38	AE2	B	161	177	Right-handed alpha
Helix 39	AE3	B	191	209	Right-handed alpha
Helix 40	AE4	C	39	43	Right-handed 310
Helix 41	AE5	C	44	49	Right-handed alpha
Helix 42	AE6	C	50	53	Right-handed 310
Helix 43	AE7	C	60	64	Right-handed 310
Helix 44	AE8	C	65	71	Right-handed alpha
Helix 45	AE9	C	75	79	Right-handed 310
Helix 46	AF1	C	82	96	Right-handed alpha
Helix 47	AF2	C	98	112	Right-handed alpha
Helix 48	AF3	C	115	126	Right-handed alpha
Helix 49	AF4	C	132	148	Right-handed alpha
Helix 50	AF5	C	149	166	Right-handed alpha
Helix 51	AF6	D	3	11	Right-handed alpha
Helix 52	AF7	D	12	17	Right-handed 310
Helix 53	AF8	D	23	27	Right-handed 310
Helix 54	AF9	D	57	59	Right-handed 310
Helix 55	AG1	D	60	70	Right-handed alpha
Helix 56	AG2	D	75	81	Right-handed alpha
Helix 57	AG3	D	83	93	Right-handed alpha
Helix 58	AG4	D	97	106	Right-handed alpha
Helix 59	AG5	D	109	119	Right-handed alpha
Helix 60	AG6	D	121	133	Right-handed alpha
Helix 61	AG7	D	150	165	Right-handed alpha
Helix 62	AG8	D	175	177	Right-handed 310
Helix 63	AG9	D	178	194	Right-handed alpha
Helix 64	AH1	D	204	214	Right-handed alpha
Helix 65	AH2	D	228	235	Right-handed alpha
Helix 66	AH3	D	238	252	Right-handed alpha
Helix 67	AH4	D	263	268	Right-handed alpha
Helix 68	AH5	D	275	290	Right-handed alpha
Helix 69	AH6	D	299	303	Right-handed 310
Helix 70	AH7	D	305	309	Right-handed 310
Helix 71	AH8	D	311	326	Right-handed alpha
Helix 72	AH9	D	341	354	Right-handed alpha
Helix 73	AI1	D	368	372	Right-handed 310
Helix 74	AI2	D	380	382	Right-handed 310
Helix 75	AI3	D	383	395	Right-handed alpha
Helix 76	AI4	D	404	426	Right-handed alpha
Helix 77	AI5	D	432	442	Right-handed alpha
Helix 78	AI6	D	444	448	Right-handed 310
Helix 79	AI7	D	452	466	Right-handed alpha
Helix 80	AI8	D	469	480	Right-handed alpha
Helix 81	AI9	D	482	495	Right-handed alpha
Helix 82	AJ1	D	496	498	Right-handed 310
Helix 83	AJ2	D	499	503	Right-handed 310
Helix 84	AJ3	D	534	543	Right-handed alpha
Helix 85	AJ4	E	83	98	Right-handed alpha
Helix 86	AJ5	E	112	124	Right-handed alpha
Helix 87	AJ6	E	156	160	Right-handed 310
Helix 88	AJ7	E	161	177	Right-handed alpha
Helix 89	AJ8	E	191	209	Right-handed alpha
Helix 90	AJ9	F	39	43	Right-handed 310
Helix 91	AK1	F	44	49	Right-handed alpha
Helix 92	AK2	F	50	53	Right-handed 310
Helix 93	AK3	F	60	64	Right-handed 310
Helix 94	AK4	F	65	71	Right-handed alpha
Helix 95	AK5	F	82	96	Right-handed alpha
Helix 96	AK6	F	98	112	Right-handed alpha
Helix 97	AK7	F	115	126	Right-handed alpha
Helix 98	AK8	F	132	148	Right-handed alpha
Helix 99	AK9	F	149	166	Right-handed alpha
Helix 100	AL1	G	3	11	Right-handed alpha
Helix 101	AL2	G	12	17	Right-handed 310
Helix 102	AL3	G	23	27	Right-handed 310
Helix 103	AL4	G	57	59	Right-handed 310
Helix 104	AL5	G	60	70	Right-handed alpha
Helix 105	AL6	G	75	81	Right-handed alpha
Helix 106	AL7	G	83	93	Right-handed alpha
Helix 107	AL8	G	97	106	Right-handed alpha
Helix 108	AL9	G	109	118	Right-handed alpha
Helix 109	AM1	G	121	133	Right-handed alpha
Helix 110	AM2	G	150	165	Right-handed alpha
Helix 111	AM3	G	175	177	Right-handed 310
Helix 112	AM4	G	178	194	Right-handed alpha
Helix 113	AM5	G	204	214	Right-handed alpha
Helix 114	AM6	G	228	235	Right-handed alpha
Helix 115	AM7	G	238	252	Right-handed alpha
Helix 116	AM8	G	263	268	Right-handed alpha
Helix 117	AM9	G	275	290	Right-handed alpha
Helix 118	AN1	G	299	303	Right-handed 310
Helix 119	AN2	G	305	309	Right-handed 310
Helix 120	AN3	G	311	326	Right-handed alpha
Helix 121	AN4	G	341	354	Right-handed alpha
Helix 122	AN5	G	368	372	Right-handed 310
Helix 123	AN6	G	380	382	Right-handed 310
Helix 124	AN7	G	383	395	Right-handed alpha
Helix 125	AN8	G	404	427	Right-handed alpha
Helix 126	AN9	G	432	442	Right-handed alpha
Helix 127	AO1	G	444	448	Right-handed 310
Helix 128	AO2	G	452	466	Right-handed alpha
Helix 129	AO3	G	469	479	Right-handed alpha
Helix 130	AO4	G	482	495	Right-handed alpha
Helix 131	AO5	G	499	503	Right-handed 310
Helix 132	AO6	G	534	543	Right-handed alpha
Helix 133	AO7	G	549	553	Right-handed 310
Helix 134	AO8	H	83	97	Right-handed alpha
Helix 135	AO9	H	112	122	Right-handed alpha
Helix 136	AP1	H	156	160	Right-handed 310
Helix 137	AP2	H	161	177	Right-handed alpha
Helix 138	AP3	H	191	209	Right-handed alpha
Helix 139	AP4	I	39	43	Right-handed 310
Helix 140	AP5	I	44	49	Right-handed alpha
Helix 141	AP6	I	50	53	Right-handed 310
Helix 142	AP7	I	60	64	Right-handed 310
Helix 143	AP8	I	65	71	Right-handed alpha
Helix 144	AP9	I	75	79	Right-handed 310
Helix 145	AQ1	I	82	96	Right-handed alpha
Helix 146	AQ2	I	98	112	Right-handed alpha
Helix 147	AQ3	I	115	126	Right-handed alpha
Helix 148	AQ4	I	132	148	Right-handed alpha
Helix 149	AQ5	I	149	166	Right-handed alpha
Helix 150	AQ6	J	3	11	Right-handed alpha
Helix 151	AQ7	J	12	17	Right-handed 310
Helix 152	AQ8	J	23	27	Right-handed 310
Helix 153	AQ9	J	57	59	Right-handed 310
Helix 154	AR1	J	60	70	Right-handed alpha
Helix 155	AR2	J	75	82	Right-handed alpha
Helix 156	AR3	J	83	93	Right-handed alpha
Helix 157	AR4	J	97	106	Right-handed alpha
Helix 158	AR5	J	109	119	Right-handed alpha
Helix 159	AR6	J	121	133	Right-handed alpha
Helix 160	AR7	J	150	165	Right-handed alpha
Helix 161	AR8	J	175	177	Right-handed 310
Helix 162	AR9	J	178	194	Right-handed alpha
Helix 163	AS1	J	204	214	Right-handed alpha
Helix 164	AS2	J	228	235	Right-handed alpha
Helix 165	AS3	J	238	252	Right-handed alpha
Helix 166	AS4	J	263	268	Right-handed alpha
Helix 167	AS5	J	275	291	Right-handed alpha
Helix 168	AS6	J	299	303	Right-handed 310
Helix 169	AS7	J	305	309	Right-handed 310
Helix 170	AS8	J	311	326	Right-handed alpha
Helix 171	AS9	J	341	354	Right-handed alpha
Helix 172	AT1	J	368	372	Right-handed 310
Helix 173	AT2	J	380	382	Right-handed 310
Helix 174	AT3	J	383	395	Right-handed alpha
Helix 175	AT4	J	404	427	Right-handed alpha
Helix 176	AT5	J	432	442	Right-handed alpha
Helix 177	AT6	J	444	448	Right-handed 310
Helix 178	AT7	J	452	466	Right-handed alpha
Helix 179	AT8	J	469	480	Right-handed alpha
Helix 180	AT9	J	482	495	Right-handed alpha
Helix 181	AU1	J	499	503	Right-handed 310
Helix 182	AU2	J	534	543	Right-handed alpha
Helix 183	AU3	K	83	98	Right-handed alpha
Helix 184	AU4	K	112	124	Right-handed alpha
Helix 185	AU5	K	156	160	Right-handed 310
Helix 186	AU6	K	161	177	Right-handed alpha
Helix 187	AU7	K	191	209	Right-handed alpha
Helix 188	AU8	L	39	43	Right-handed 310
Helix 189	AU9	L	44	49	Right-handed alpha
Helix 190	AV1	L	50	53	Right-handed 310
Helix 191	AV2	L	60	64	Right-handed 310
Helix 192	AV3	L	65	71	Right-handed alpha
Helix 193	AV4	L	75	79	Right-handed 310
Helix 194	AV5	L	82	96	Right-handed alpha
Helix 195	AV6	L	98	112	Right-handed alpha
Helix 196	AV7	L	115	126	Right-handed alpha
Helix 197	AV8	L	132	148	Right-handed alpha
Helix 198	AV9	L	149	166	Right-handed alpha

There are 21 sheets in PDB entry 5YRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	54	55	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	201	first strand
Strand 2	A	168	171	parallel
Strand 3	A	141	143	parallel
Strand 4	A	362	365	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	224	first strand
Strand 2	A	255	259	parallel
Strand 3	A	294	296	parallel
Strand 4	A	329	331	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	509	first strand
Strand 2	A	513	515	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	218	222	anti-parallel
Strand 3	B	101	106	anti-parallel
Strand 4	B	62	67	parallel
Strand 5	B	128	132	parallel
Strand 6	B	138	142	anti-parallel
Strand 7	B	152	154	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	47	51	anti-parallel
Strand 3	D	54	55	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	201	first strand
Strand 2	D	168	171	parallel
Strand 3	D	141	143	parallel
Strand 4	D	362	365	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	224	first strand
Strand 2	D	255	259	parallel
Strand 3	D	294	296	parallel
Strand 4	D	329	331	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	509	first strand
Strand 2	D	513	515	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	53	first strand
Strand 2	E	218	222	anti-parallel
Strand 3	E	101	106	anti-parallel
Strand 4	E	62	67	parallel
Strand 5	E	128	132	parallel
Strand 6	E	138	142	anti-parallel
Strand 7	E	152	154	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	44	first strand
Strand 2	G	47	51	anti-parallel
Strand 3	G	54	55	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	198	201	first strand
Strand 2	G	168	171	parallel
Strand 3	G	141	143	parallel
Strand 4	G	362	365	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	219	224	first strand
Strand 2	G	255	259	parallel
Strand 3	G	294	296	parallel
Strand 4	G	329	331	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	507	509	first strand
Strand 2	G	513	515	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	547	548	first strand
Strand 2	J	19	20	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	53	first strand
Strand 2	H	218	222	anti-parallel
Strand 3	H	101	106	anti-parallel
Strand 4	H	62	67	parallel
Strand 5	H	128	132	parallel
Strand 6	H	138	142	anti-parallel
Strand 7	H	152	154	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	41	44	first strand
Strand 2	J	47	51	anti-parallel
Strand 3	J	54	55	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	198	201	first strand
Strand 2	J	168	171	parallel
Strand 3	J	139	143	parallel
Strand 4	J	359	365	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	219	224	first strand
Strand 2	J	255	259	parallel
Strand 3	J	294	296	parallel
Strand 4	J	329	331	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	507	509	first strand
Strand 2	J	513	515	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	53	first strand
Strand 2	K	218	222	anti-parallel
Strand 3	K	101	106	anti-parallel
Strand 4	K	62	67	parallel
Strand 5	K	128	132	parallel
Strand 6	K	138	142	anti-parallel
Strand 7	K	152	154	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YRV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YRV