Analysis of interatomic Contacts of Structural Units in PDB entry:
5YS2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YS2 entry

There are 6 chains in PDB entry 5YS2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 65	LEU 641
B	ASP 64	LEU 639
C	ASP 64	LEU 641
D	ASP 64	LEU 641
E	ASP 64	ASN 640
F	ASP 64	LEU 641

There are 14 helices in PDB entry 5YS2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	490	516	Right-handed alpha
Helix 2	AA2	A	516	526	Right-handed alpha
Helix 3	AA3	B	490	516	Right-handed alpha
Helix 4	AA4	B	516	526	Right-handed alpha
Helix 5	AA5	C	490	516	Right-handed alpha
Helix 6	AA6	C	516	526	Right-handed alpha
Helix 7	AA7	C	587	589	Right-handed 310
Helix 8	AA8	D	490	516	Right-handed alpha
Helix 9	AA9	D	516	526	Right-handed alpha
Helix 10	AB1	D	587	589	Right-handed 310
Helix 11	AB2	E	489	516	Right-handed alpha
Helix 12	AB3	E	516	526	Right-handed alpha
Helix 13	AB4	F	490	516	Right-handed alpha
Helix 14	AB5	F	516	526	Right-handed alpha

There are 29 sheets in PDB entry 5YS2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	67	68	anti-parallel
Strand 3	A	590	592	parallel
Strand 4	A	580	585	anti-parallel
Strand 5	A	570	574	anti-parallel
Strand 6	A	551	552	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	534	first strand
Strand 2	A	537	542	anti-parallel
Strand 3	A	77	80	anti-parallel
Strand 4	C	632	633	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	566	first strand
Strand 2	A	598	600	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	611	first strand
Strand 2	A	614	619	anti-parallel
Strand 3	A	622	627	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	633	first strand
Strand 2	B	77	80	parallel
Strand 3	B	538	542	anti-parallel
Strand 4	B	529	533	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	546	first strand
Strand 2	B	66	68	anti-parallel
Strand 3	B	590	592	parallel
Strand 4	B	582	585	anti-parallel
Strand 5	B	570	572	anti-parallel
Strand 6	B	551	553	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	566	first strand
Strand 2	B	598	600	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	611	first strand
Strand 2	B	614	619	anti-parallel
Strand 3	B	622	627	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	633	first strand
Strand 2	C	77	80	parallel
Strand 3	C	538	542	anti-parallel
Strand 4	C	529	533	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	544	545	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	552	first strand
Strand 2	C	570	574	anti-parallel
Strand 3	C	580	585	anti-parallel
Strand 4	C	591	592	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	566	first strand
Strand 2	C	598	600	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	606	611	first strand
Strand 2	C	614	619	anti-parallel
Strand 3	C	622	627	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	544	545	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	534	first strand
Strand 2	D	537	542	anti-parallel
Strand 3	D	77	80	anti-parallel
Strand 4	F	632	633	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	552	first strand
Strand 2	D	571	573	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	566	first strand
Strand 2	D	598	600	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	584	585	first strand
Strand 2	D	591	592	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	606	611	first strand
Strand 2	D	614	619	anti-parallel
Strand 3	D	622	627	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	632	633	first strand
Strand 2	E	77	80	parallel
Strand 3	E	538	542	anti-parallel
Strand 4	E	529	533	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	68	first strand
Strand 2	E	544	545	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	550	552	first strand
Strand 2	E	570	573	anti-parallel
Strand 3	E	581	585	anti-parallel
Strand 4	E	591	592	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	564	566	first strand
Strand 2	E	598	600	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	606	611	first strand
Strand 2	E	614	619	anti-parallel
Strand 3	E	622	627	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	632	633	first strand
Strand 2	F	79	80	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	544	545	first strand
Strand 2	F	67	68	anti-parallel
Strand 3	F	590	592	parallel
Strand 4	F	581	585	anti-parallel
Strand 5	F	570	573	anti-parallel
Strand 6	F	550	552	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	532	533	first strand
Strand 2	F	538	539	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	566	first strand
Strand 2	F	598	600	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	606	611	first strand
Strand 2	F	614	619	anti-parallel
Strand 3	F	622	627	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YS2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YS2