Analysis of interatomic Contacts of Structural Units in PDB entry:
5YS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YS5 entry

There is 1 chain in PDB entry 5YS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 31VAL 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5YS5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
147 154Right-handed alpha
Helix 2
AA2
A
164 169Right-handed alpha
Helix 3
AA3
A
203 208Right-handed alpha
Helix 4
AA4
A
356 369Right-handed alpha
Helix 5
AA5
A
463 467Right-handed 310
Helix 6
AA6
A
491 495Right-handed 310
Helix 7
AA7
A
502 508Right-handed alpha
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There are 6 sheets in PDB entry 5YS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 40first strand
Strand 2
A
77 81parallel
Strand 3
A
158 163parallel
Strand 4
A
136 141anti-parallel
Strand 5
A
101 103anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
62 69first strand
Strand 2
A
47 59anti-parallel
Strand 3
A
85 92parallel
Strand 4
A
124 130anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
219 220first strand
Strand 2
A
213 216anti-parallel
Strand 3
A
180 188anti-parallel
Strand 4
A
223 237parallel
Strand 5
A
280 287anti-parallel
Strand 6
A
254 259anti-parallel
Strand 7
A
262 270anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
219 220first strand
Strand 2
A
213 216anti-parallel
Strand 3
A
180 188anti-parallel
Strand 4
A
223 237parallel
Strand 5
A
314 325parallel
Strand 6
A
293 297anti-parallel
Strand 7
A
244 248anti-parallel
Strand 8
A
273 275anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
409 410first strand
Strand 2
A
348 354anti-parallel
Strand 3
A
430 435parallel
Strand 4
A
479 484anti-parallel
Strand 5
A
452 456anti-parallel
Strand 6
A
469 470anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
422 423first strand
Strand 2
A
511 515parallel
Strand 3
A
496 500anti-parallel
Strand 4
A
442 447anti-parallel
Strand 5
A
472 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il