Analysis of interatomic Contacts of Structural Units in PDB entry:
5YS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YS6 entry

There is 1 chain in PDB entry 5YS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 121LYS 739
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5YS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
204 211Right-handed alpha
Helix 2
AA2
A
234 238Right-handed 310
Helix 3
AA3
A
369 374Right-handed alpha
Helix 4
AA4
A
415 419Right-handed 310
Helix 5
AA5
A
423 441Right-handed alpha
Helix 6
AA6
A
529 574Right-handed alpha
Helix 7
AA7
A
574 584Right-handed alpha
Helix 8
AA8
A
714 720Right-handed alpha
Helix 9
AA9
A
725 733Right-handed alpha
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There are 11 sheets in PDB entry 5YS6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
602 604anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
596 599anti-parallel
Strand 3
A
588 591anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 409first strand
Strand 2
A
396 400anti-parallel
Strand 3
A
377 388anti-parallel
Strand 4
A
154 163anti-parallel
Strand 5
A
461 470anti-parallel
Strand 6
A
445 447anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 409first strand
Strand 2
A
396 400anti-parallel
Strand 3
A
377 388anti-parallel
Strand 4
A
154 163anti-parallel
Strand 5
A
461 470anti-parallel
Strand 6
A
453 457anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 202first strand
Strand 2
A
168 186anti-parallel
Strand 3
A
274 291anti-parallel
Strand 4
A
298 300anti-parallel
Strand 5
A
305 306anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
257 259anti-parallel
Strand 3
A
274 291anti-parallel
Strand 4
A
168 186anti-parallel
Strand 5
A
362 366anti-parallel
Strand 6
A
351 357anti-parallel
Strand 7
A
330 336anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
242 244anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
230 231anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 610first strand
Strand 2
A
628 631anti-parallel
Strand 3
A
639 642anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 624first strand
Strand 2
A
656 658anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 669first strand
Strand 2
A
672 677anti-parallel
Strand 3
A
681 685anti-parallel
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