Analysis of interatomic Contacts of Structural Units in PDB entry:
5YS9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YS9 entry

There are 2 chains in PDB entry 5YS9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8GLU 699
B
 ASN 9GLU 699
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 5YS9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed alpha
Helix 2
AA2
A
37 47Right-handed alpha
Helix 3
AA3
A
48 64Right-handed alpha
Helix 4
AA4
A
72 76Right-handed 310
Helix 5
AA5
A
77 93Right-handed alpha
Helix 6
AA6
A
94 96Right-handed 310
Helix 7
AA7
A
100 112Right-handed alpha
Helix 8
AA8
A
115 127Right-handed alpha
Helix 9
AA9
A
127 137Right-handed alpha
Helix 10
AB1
A
138 148Right-handed alpha
Helix 11
AB2
A
170 174Right-handed 310
Helix 12
AB3
A
193 197Right-handed 310
Helix 13
AB4
A
274 276Right-handed 310
Helix 14
AB5
A
299 331Right-handed alpha
Helix 15
AB6
A
344 347Right-handed 310
Helix 16
AB7
A
348 386Right-handed alpha
Helix 17
AB8
A
390 429Right-handed alpha
Helix 18
AB9
A
430 439Right-handed 310
Helix 19
AC1
A
440 449Right-handed alpha
Helix 20
AC2
A
450 453Right-handed 310
Helix 21
AC3
A
457 478Right-handed alpha
Helix 22
AC4
A
483 495Right-handed 310
Helix 23
AC5
A
506 535Right-handed alpha
Helix 24
AC6
A
538 546Right-handed alpha
Helix 25
AC7
A
546 574Right-handed alpha
Helix 26
AC8
A
578 597Right-handed alpha
Helix 27
AC9
A
597 604Right-handed alpha
Helix 28
AD1
A
608 629Right-handed alpha
Helix 29
AD2
A
629 636Right-handed alpha
Helix 30
AD3
A
640 645Right-handed alpha
Helix 31
AD4
A
646 650Right-handed 310
Helix 32
AD5
A
654 667Right-handed alpha
Helix 33
AD6
A
680 686Right-handed alpha
Helix 34
AD7
B
22 33Right-handed alpha
Helix 35
AD8
B
37 47Right-handed alpha
Helix 36
AD9
B
48 65Right-handed alpha
Helix 37
AE1
B
66 69Right-handed 310
Helix 38
AE2
B
72 76Right-handed 310
Helix 39
AE3
B
77 93Right-handed alpha
Helix 40
AE4
B
94 96Right-handed 310
Helix 41
AE5
B
100 112Right-handed alpha
Helix 42
AE6
B
115 127Right-handed alpha
Helix 43
AE7
B
127 137Right-handed alpha
Helix 44
AE8
B
138 148Right-handed alpha
Helix 45
AE9
B
170 174Right-handed 310
Helix 46
AF1
B
193 197Right-handed 310
Helix 47
AF2
B
274 276Right-handed 310
Helix 48
AF3
B
293 298Right-handed 310
Helix 49
AF4
B
299 331Right-handed alpha
Helix 50
AF5
B
344 347Right-handed 310
Helix 51
AF6
B
348 385Right-handed alpha
Helix 52
AF7
B
390 430Right-handed alpha
Helix 53
AF8
B
431 439Right-handed 310
Helix 54
AF9
B
440 449Right-handed alpha
Helix 55
AG1
B
450 453Right-handed 310
Helix 56
AG2
B
457 478Right-handed alpha
Helix 57
AG3
B
483 491Right-handed 310
Helix 58
AG4
B
492 496Right-handed 310
Helix 59
AG5
B
506 535Right-handed alpha
Helix 60
AG6
B
538 546Right-handed alpha
Helix 61
AG7
B
546 574Right-handed alpha
Helix 62
AG8
B
578 597Right-handed alpha
Helix 63
AG9
B
597 604Right-handed alpha
Helix 64
AH1
B
608 629Right-handed alpha
Helix 65
AH2
B
629 636Right-handed alpha
Helix 66
AH3
B
640 645Right-handed alpha
Helix 67
AH4
B
646 650Right-handed 310
Helix 68
AH5
B
654 667Right-handed alpha
Helix 69
AH6
B
680 686Right-handed alpha
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There are 10 sheets in PDB entry 5YS9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
15 17anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
210 219parallel
Strand 3
A
222 232anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
210 219parallel
Strand 3
A
177 181parallel
Strand 4
A
186 190anti-parallel
Strand 5
A
269 272anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
262 266anti-parallel
Strand 3
A
245 249anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
289 290anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
15 17anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
210 219parallel
Strand 3
B
222 232anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
210 219parallel
Strand 3
B
177 181parallel
Strand 4
B
186 190anti-parallel
Strand 5
B
269 272anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
262 266anti-parallel
Strand 3
B
245 249anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
289 290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il