Analysis of interatomic Contacts of Structural Units in PDB entry:
5YSC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YSC entry

There is 1 chain in PDB entry 5YSC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 22GLN 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5YSC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 42Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
58 64Right-handed 310
Helix 4
AA4
A
74 82Right-handed alpha
Helix 5
AA5
A
94 104Right-handed alpha
Helix 6
AA6
A
116 128Right-handed alpha
Helix 7
AA7
A
132 154Right-handed alpha
Helix 8
AA8
A
180 187Right-handed alpha
Helix 9
AA9
A
204 212Right-handed alpha
Helix 10
AB1
A
219 226Right-handed alpha
Helix 11
AB2
A
229 233Right-handed 310
Helix 12
AB3
A
236 241Right-handed alpha
Helix 13
AB4
A
248 254Right-handed alpha
Helix 14
AB5
A
258 273Right-handed alpha
Helix 15
AB6
A
274 276Right-handed 310
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There are 3 sheets in PDB entry 5YSC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
28 30parallel
Strand 3
A
85 88parallel
Strand 4
A
108 110parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
160 164parallel
Strand 3
A
215 218parallel
Strand 4
A
244 246parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
202 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il