Analysis of interatomic Contacts of Structural Units in PDB entry:
5YSH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YSH entry

There are 4 chains in PDB entry 5YSH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 551
B	GLY 46	VAL 222
C	ALA 38	ASP 173
D	MET 1	GLU 435

There are192 helices in PDB entry 5YSH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	11	Right-handed alpha
Helix 2	AA2	A	12	17	Right-handed 310
Helix 3	AA3	A	23	27	Right-handed 310
Helix 4	AA4	A	57	59	Right-handed 310
Helix 5	AA5	A	60	70	Right-handed alpha
Helix 6	AA6	A	75	82	Right-handed alpha
Helix 7	AA7	A	83	93	Right-handed alpha
Helix 8	AA8	A	97	106	Right-handed alpha
Helix 9	AA9	A	109	119	Right-handed alpha
Helix 10	AB1	A	121	133	Right-handed alpha
Helix 11	AB2	A	150	165	Right-handed alpha
Helix 12	AB3	A	175	177	Right-handed 310
Helix 13	AB4	A	178	194	Right-handed alpha
Helix 14	AB5	A	204	214	Right-handed alpha
Helix 15	AB6	A	228	235	Right-handed alpha
Helix 16	AB7	A	238	252	Right-handed alpha
Helix 17	AB8	A	263	268	Right-handed alpha
Helix 18	AB9	A	275	291	Right-handed alpha
Helix 19	AC1	A	299	303	Right-handed 310
Helix 20	AC2	A	305	309	Right-handed 310
Helix 21	AC3	A	311	326	Right-handed alpha
Helix 22	AC4	A	341	354	Right-handed alpha
Helix 23	AC5	A	368	372	Right-handed 310
Helix 24	AC6	A	380	382	Right-handed 310
Helix 25	AC7	A	383	395	Right-handed alpha
Helix 26	AC8	A	404	426	Right-handed alpha
Helix 27	AC9	A	432	442	Right-handed alpha
Helix 28	AD1	A	444	448	Right-handed 310
Helix 29	AD2	A	452	466	Right-handed alpha
Helix 30	AD3	A	469	480	Right-handed alpha
Helix 31	AD4	A	482	499	Right-handed alpha
Helix 32	AD5	A	500	503	Right-handed 310
Helix 33	AD6	A	534	543	Right-handed alpha
Helix 34	AD7	B	83	98	Right-handed alpha
Helix 35	AD8	B	112	124	Right-handed alpha
Helix 36	AD9	B	156	160	Right-handed 310
Helix 37	AE1	B	161	177	Right-handed alpha
Helix 38	AE2	B	191	208	Right-handed alpha
Helix 39	AE3	B	209	211	Right-handed 310
Helix 40	AE4	C	39	43	Right-handed 310
Helix 41	AE5	C	44	49	Right-handed alpha
Helix 42	AE6	C	50	53	Right-handed 310
Helix 43	AE7	C	60	64	Right-handed 310
Helix 44	AE8	C	65	71	Right-handed alpha
Helix 45	AE9	C	82	96	Right-handed alpha
Helix 46	AF1	C	98	112	Right-handed alpha
Helix 47	AF2	C	115	126	Right-handed alpha
Helix 48	AF3	C	132	148	Right-handed alpha
Helix 49	AF4	C	149	166	Right-handed alpha
Helix 50	AF5	D	3	11	Right-handed alpha
Helix 51	AF6	D	12	17	Right-handed 310
Helix 52	AF7	D	23	27	Right-handed 310
Helix 53	AF8	D	57	59	Right-handed 310
Helix 54	AF9	D	60	70	Right-handed alpha
Helix 55	AG1	D	75	82	Right-handed alpha
Helix 56	AG2	D	83	93	Right-handed alpha
Helix 57	AG3	D	97	106	Right-handed alpha
Helix 58	AG4	D	109	118	Right-handed alpha
Helix 59	AG5	D	121	133	Right-handed alpha
Helix 60	AG6	D	150	165	Right-handed alpha
Helix 61	AG7	D	175	177	Right-handed 310
Helix 62	AG8	D	178	194	Right-handed alpha
Helix 63	AG9	D	204	214	Right-handed alpha
Helix 64	AH1	D	228	235	Right-handed alpha
Helix 65	AH2	D	238	252	Right-handed alpha
Helix 66	AH3	D	263	268	Right-handed alpha
Helix 67	AH4	D	275	290	Right-handed alpha
Helix 68	AH5	D	299	303	Right-handed 310
Helix 69	AH6	D	305	309	Right-handed 310
Helix 70	AH7	D	311	326	Right-handed alpha
Helix 71	AH8	D	341	354	Right-handed alpha
Helix 72	AH9	D	368	372	Right-handed 310
Helix 73	AI1	D	380	382	Right-handed 310
Helix 74	AI2	D	383	395	Right-handed alpha
Helix 75	AI3	D	404	427	Right-handed alpha
Helix 76	AI4	D	432	442	Right-handed alpha
Helix 77	AI5	D	444	448	Right-handed 310
Helix 78	AI6	D	452	466	Right-handed alpha
Helix 79	AI7	D	469	480	Right-handed alpha
Helix 80	AI8	D	482	499	Right-handed alpha
Helix 81	AI9	D	500	503	Right-handed 310
Helix 82	AJ1	D	534	543	Right-handed alpha
Helix 83	AJ2	E	83	97	Right-handed alpha
Helix 84	AJ3	E	112	124	Right-handed alpha
Helix 85	AJ4	E	156	160	Right-handed 310
Helix 86	AJ5	E	161	177	Right-handed alpha
Helix 87	AJ6	E	191	209	Right-handed alpha
Helix 88	AJ7	F	39	43	Right-handed 310
Helix 89	AJ8	F	44	49	Right-handed alpha
Helix 90	AJ9	F	50	53	Right-handed 310
Helix 91	AK1	F	60	64	Right-handed 310
Helix 92	AK2	F	65	71	Right-handed alpha
Helix 93	AK3	F	82	96	Right-handed alpha
Helix 94	AK4	F	98	112	Right-handed alpha
Helix 95	AK5	F	115	127	Right-handed alpha
Helix 96	AK6	F	132	148	Right-handed alpha
Helix 97	AK7	F	149	166	Right-handed alpha
Helix 98	AK8	G	3	11	Right-handed alpha
Helix 99	AK9	G	12	17	Right-handed 310
Helix 100	AL1	G	23	27	Right-handed 310
Helix 101	AL2	G	57	59	Right-handed 310
Helix 102	AL3	G	60	70	Right-handed alpha
Helix 103	AL4	G	75	81	Right-handed alpha
Helix 104	AL5	G	83	93	Right-handed alpha
Helix 105	AL6	G	97	106	Right-handed alpha
Helix 106	AL7	G	109	118	Right-handed alpha
Helix 107	AL8	G	121	133	Right-handed alpha
Helix 108	AL9	G	150	165	Right-handed alpha
Helix 109	AM1	G	175	177	Right-handed 310
Helix 110	AM2	G	178	194	Right-handed alpha
Helix 111	AM3	G	204	215	Right-handed alpha
Helix 112	AM4	G	228	235	Right-handed alpha
Helix 113	AM5	G	238	252	Right-handed alpha
Helix 114	AM6	G	263	268	Right-handed alpha
Helix 115	AM7	G	275	290	Right-handed alpha
Helix 116	AM8	G	299	303	Right-handed 310
Helix 117	AM9	G	305	309	Right-handed 310
Helix 118	AN1	G	311	326	Right-handed alpha
Helix 119	AN2	G	341	354	Right-handed alpha
Helix 120	AN3	G	368	372	Right-handed 310
Helix 121	AN4	G	380	382	Right-handed 310
Helix 122	AN5	G	383	395	Right-handed alpha
Helix 123	AN6	G	404	427	Right-handed alpha
Helix 124	AN7	G	432	442	Right-handed alpha
Helix 125	AN8	G	444	448	Right-handed 310
Helix 126	AN9	G	452	466	Right-handed alpha
Helix 127	AO1	G	469	480	Right-handed alpha
Helix 128	AO2	G	482	499	Right-handed alpha
Helix 129	AO3	G	500	503	Right-handed 310
Helix 130	AO4	G	534	543	Right-handed alpha
Helix 131	AO5	H	83	98	Right-handed alpha
Helix 132	AO6	H	112	124	Right-handed alpha
Helix 133	AO7	H	156	160	Right-handed 310
Helix 134	AO8	H	161	177	Right-handed alpha
Helix 135	AO9	H	191	209	Right-handed alpha
Helix 136	AP1	I	39	43	Right-handed 310
Helix 137	AP2	I	44	49	Right-handed alpha
Helix 138	AP3	I	50	53	Right-handed 310
Helix 139	AP4	I	60	64	Right-handed 310
Helix 140	AP5	I	65	71	Right-handed alpha
Helix 141	AP6	I	82	96	Right-handed alpha
Helix 142	AP7	I	98	112	Right-handed alpha
Helix 143	AP8	I	115	127	Right-handed alpha
Helix 144	AP9	I	132	148	Right-handed alpha
Helix 145	AQ1	I	149	166	Right-handed alpha
Helix 146	AQ2	J	3	11	Right-handed alpha
Helix 147	AQ3	J	12	17	Right-handed 310
Helix 148	AQ4	J	23	27	Right-handed 310
Helix 149	AQ5	J	57	59	Right-handed 310
Helix 150	AQ6	J	60	70	Right-handed alpha
Helix 151	AQ7	J	75	81	Right-handed alpha
Helix 152	AQ8	J	83	93	Right-handed alpha
Helix 153	AQ9	J	97	106	Right-handed alpha
Helix 154	AR1	J	109	119	Right-handed alpha
Helix 155	AR2	J	121	133	Right-handed alpha
Helix 156	AR3	J	150	165	Right-handed alpha
Helix 157	AR4	J	175	177	Right-handed 310
Helix 158	AR5	J	178	194	Right-handed alpha
Helix 159	AR6	J	204	214	Right-handed alpha
Helix 160	AR7	J	228	235	Right-handed alpha
Helix 161	AR8	J	238	252	Right-handed alpha
Helix 162	AR9	J	263	268	Right-handed alpha
Helix 163	AS1	J	275	291	Right-handed alpha
Helix 164	AS2	J	299	302	Right-handed 310
Helix 165	AS3	J	303	309	Right-handed alpha
Helix 166	AS4	J	311	326	Right-handed alpha
Helix 167	AS5	J	341	354	Right-handed alpha
Helix 168	AS6	J	368	372	Right-handed 310
Helix 169	AS7	J	380	382	Right-handed 310
Helix 170	AS8	J	383	395	Right-handed alpha
Helix 171	AS9	J	404	426	Right-handed alpha
Helix 172	AT1	J	432	442	Right-handed alpha
Helix 173	AT2	J	444	448	Right-handed 310
Helix 174	AT3	J	452	466	Right-handed alpha
Helix 175	AT4	J	469	480	Right-handed alpha
Helix 176	AT5	J	482	499	Right-handed alpha
Helix 177	AT6	J	500	503	Right-handed 310
Helix 178	AT7	J	534	543	Right-handed alpha
Helix 179	AT8	K	83	97	Right-handed alpha
Helix 180	AT9	K	112	122	Right-handed alpha
Helix 181	AU1	K	156	160	Right-handed 310
Helix 182	AU2	K	161	177	Right-handed alpha
Helix 183	AU3	K	191	209	Right-handed alpha
Helix 184	AU4	L	39	43	Right-handed 310
Helix 185	AU5	L	44	49	Right-handed alpha
Helix 186	AU6	L	60	64	Right-handed 310
Helix 187	AU7	L	65	71	Right-handed alpha
Helix 188	AU8	L	82	96	Right-handed alpha
Helix 189	AU9	L	98	112	Right-handed alpha
Helix 190	AV1	L	115	127	Right-handed alpha
Helix 191	AV2	L	132	147	Right-handed alpha
Helix 192	AV3	L	149	166	Right-handed alpha

There are 21 sheets in PDB entry 5YSH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	54	55	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	201	first strand
Strand 2	A	168	171	parallel
Strand 3	A	139	143	parallel
Strand 4	A	359	365	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	224	first strand
Strand 2	A	255	259	parallel
Strand 3	A	294	296	parallel
Strand 4	A	329	331	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	509	first strand
Strand 2	A	513	515	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	53	first strand
Strand 2	B	218	221	anti-parallel
Strand 3	B	101	106	anti-parallel
Strand 4	B	62	67	parallel
Strand 5	B	128	132	parallel
Strand 6	B	138	142	anti-parallel
Strand 7	B	152	154	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	47	51	anti-parallel
Strand 3	D	54	55	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	201	first strand
Strand 2	D	168	171	parallel
Strand 3	D	141	143	parallel
Strand 4	D	362	365	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	224	first strand
Strand 2	D	255	259	parallel
Strand 3	D	294	296	parallel
Strand 4	D	329	331	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	509	first strand
Strand 2	D	513	515	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	53	first strand
Strand 2	E	218	222	anti-parallel
Strand 3	E	101	106	anti-parallel
Strand 4	E	62	67	parallel
Strand 5	E	128	132	parallel
Strand 6	E	138	142	anti-parallel
Strand 7	E	152	154	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	20	first strand
Strand 2	J	547	548	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	44	first strand
Strand 2	G	47	51	anti-parallel
Strand 3	G	54	55	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	198	201	first strand
Strand 2	G	168	171	parallel
Strand 3	G	141	143	parallel
Strand 4	G	362	365	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	219	224	first strand
Strand 2	G	255	259	parallel
Strand 3	G	294	296	parallel
Strand 4	G	329	331	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	507	509	first strand
Strand 2	G	513	515	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	53	first strand
Strand 2	H	218	222	anti-parallel
Strand 3	H	101	106	anti-parallel
Strand 4	H	62	67	parallel
Strand 5	H	128	132	parallel
Strand 6	H	138	142	anti-parallel
Strand 7	H	152	154	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	41	44	first strand
Strand 2	J	47	51	anti-parallel
Strand 3	J	54	55	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	198	201	first strand
Strand 2	J	168	171	parallel
Strand 3	J	141	143	parallel
Strand 4	J	362	365	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	219	224	first strand
Strand 2	J	255	259	parallel
Strand 3	J	294	296	parallel
Strand 4	J	329	331	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	507	509	first strand
Strand 2	J	513	515	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	53	first strand
Strand 2	K	218	220	anti-parallel
Strand 3	K	101	106	anti-parallel
Strand 4	K	62	67	parallel
Strand 5	K	129	132	parallel
Strand 6	K	138	141	anti-parallel
Strand 7	K	152	154	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YSH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YSH