Analysis of interatomic Contacts of Structural Units in PDB entry:
5YSL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YSL entry

There are 8 chains in PDB entry 5YSL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	PRO 218
B	ASP 10	ASN 222
C	LYS 3	PRO 218
D	ASP 10	ASN 222
E	LYS 3	PRO 218
F	ASP 10	ASN 222
G	LYS 3	PRO 218
H	ASP 10	ASN 222

There are 37 helices in PDB entry 5YSL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	87	91	Right-handed 310
Helix 4	AA4	A	162	164	Right-handed 310
Helix 5	AA5	A	206	208	Right-handed 310
Helix 6	AA6	B	39	41	Right-handed 310
Helix 7	AA7	B	89	93	Right-handed 310
Helix 8	AA8	B	131	136	Right-handed alpha
Helix 9	AA9	B	193	198	Right-handed alpha
Helix 10	AB1	C	28	32	Right-handed 310
Helix 11	AB2	C	62	65	Right-handed 310
Helix 12	AB3	C	87	91	Right-handed 310
Helix 13	AB4	C	162	164	Right-handed 310
Helix 14	AB5	C	206	208	Right-handed 310
Helix 15	AB6	D	39	41	Right-handed 310
Helix 16	AB7	D	89	93	Right-handed 310
Helix 17	AB8	D	131	136	Right-handed alpha
Helix 18	AB9	D	193	198	Right-handed alpha
Helix 19	AC1	E	28	32	Right-handed 310
Helix 20	AC2	E	62	65	Right-handed 310
Helix 21	AC3	E	74	76	Right-handed 310
Helix 22	AC4	E	87	91	Right-handed 310
Helix 23	AC5	E	101	104	Right-handed 310
Helix 24	AC6	E	206	208	Right-handed 310
Helix 25	AC7	F	39	41	Right-handed 310
Helix 26	AC8	F	89	93	Right-handed 310
Helix 27	AC9	F	131	136	Right-handed alpha
Helix 28	AD1	F	193	197	Right-handed alpha
Helix 29	AD2	G	28	32	Right-handed 310
Helix 30	AD3	G	62	65	Right-handed 310
Helix 31	AD4	G	87	91	Right-handed 310
Helix 32	AD5	G	162	164	Right-handed 310
Helix 33	AD6	G	206	208	Right-handed 310
Helix 34	AD7	H	39	41	Right-handed 310
Helix 35	AD8	H	89	93	Right-handed 310
Helix 36	AD9	H	131	136	Right-handed alpha
Helix 37	AE1	H	193	197	Right-handed alpha

There are 41 sheets in PDB entry 5YSL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	106	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	180	190	anti-parallel
Strand 4	A	169	171	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	141	151	anti-parallel
Strand 3	A	180	190	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	210	215	anti-parallel
Strand 4	G	210	215	anti-parallel
Strand 5	G	200	205	anti-parallel
Strand 6	G	157	160	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	28	38	anti-parallel
Strand 3	B	72	85	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	22	first strand
Strand 2	B	112	116	parallel
Strand 3	B	94	100	anti-parallel
Strand 4	B	43	48	anti-parallel
Strand 5	B	55	59	anti-parallel
Strand 6	B	63	64	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	22	first strand
Strand 2	B	112	116	parallel
Strand 3	B	94	100	anti-parallel
Strand 4	B	107	108	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	128	first strand
Strand 2	B	139	149	anti-parallel
Strand 3	B	183	192	anti-parallel
Strand 4	B	169	173	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	201	207	anti-parallel
Strand 4	B	215	220	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	106	109	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	141	151	anti-parallel
Strand 3	C	181	190	anti-parallel
Strand 4	C	169	171	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	200	205	anti-parallel
Strand 3	C	210	215	anti-parallel
Strand 4	E	210	215	anti-parallel
Strand 5	E	200	205	anti-parallel
Strand 6	E	157	160	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	28	34	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	72	77	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	112	116	parallel
Strand 3	D	94	100	anti-parallel
Strand 4	D	43	48	anti-parallel
Strand 5	D	55	59	anti-parallel
Strand 6	D	63	64	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	112	116	parallel
Strand 3	D	94	100	anti-parallel
Strand 4	D	107	108	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	128	first strand
Strand 2	D	139	149	anti-parallel
Strand 3	D	183	192	anti-parallel
Strand 4	D	169	173	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	165	first strand
Strand 2	D	155	160	anti-parallel
Strand 3	D	201	207	anti-parallel
Strand 4	D	215	220	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	106	109	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	130	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	180	190	anti-parallel
Strand 4	E	170	171	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	130	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	180	190	anti-parallel
Strand 4	E	175	177	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	28	34	anti-parallel
Strand 3	F	80	85	anti-parallel
Strand 4	F	72	77	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	22	first strand
Strand 2	F	112	116	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	43	48	anti-parallel
Strand 5	F	55	59	anti-parallel
Strand 6	F	63	64	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	22	first strand
Strand 2	F	112	116	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	107	108	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	128	first strand
Strand 2	F	139	149	anti-parallel
Strand 3	F	183	192	anti-parallel
Strand 4	F	169	173	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	160	first strand
Strand 2	F	201	207	anti-parallel
Strand 3	F	215	220	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	18	23	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	113	117	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	113	117	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	106	109	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	130	first strand
Strand 2	G	141	151	anti-parallel
Strand 3	G	180	190	anti-parallel
Strand 4	G	170	171	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	130	first strand
Strand 2	G	141	151	anti-parallel
Strand 3	G	180	190	anti-parallel
Strand 4	G	175	177	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	16	first strand
Strand 2	H	28	34	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	72	77	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	112	116	parallel
Strand 3	H	94	100	anti-parallel
Strand 4	H	43	48	anti-parallel
Strand 5	H	55	59	anti-parallel
Strand 6	H	63	64	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	112	116	parallel
Strand 3	H	94	100	anti-parallel
Strand 4	H	107	108	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	183	192	anti-parallel
Strand 4	H	169	173	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	165	first strand
Strand 2	H	155	159	anti-parallel
Strand 3	H	203	207	anti-parallel
Strand 4	H	215	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YSL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YSL