Analysis of interatomic Contacts of Structural Units in PDB entry:
5YSM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YSM entry

There is 1 chain in PDB entry 5YSM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 19ASP 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5YSM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 24Right-handed 310
Helix 2
AA2
A
33 42Right-handed alpha
Helix 3
AA3
A
61 70Right-handed alpha
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
A
112 125Right-handed alpha
Helix 6
AA6
A
126 152Right-handed alpha
Helix 7
AA7
A
157 161Right-handed alpha
Helix 8
AA8
A
163 175Right-handed alpha
Helix 9
AA9
A
177 179Right-handed 310
Helix 10
AB1
A
180 190Right-handed alpha
Helix 11
AB2
A
206 222Right-handed alpha
Helix 12
AB3
A
226 234Right-handed alpha
Helix 13
AB4
A
242 275Right-handed alpha
Helix 14
AB5
A
275 285Right-handed alpha
Helix 15
AB6
A
288 301Right-handed alpha
Helix 16
AB7
A
331 336Right-handed alpha
Helix 17
AB8
A
368 387Right-handed alpha
Helix 18
AB9
A
395 399Right-handed 310
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There are 3 sheets in PDB entry 5YSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
56 59anti-parallel
Strand 3
A
327 330parallel
Strand 4
A
307 311anti-parallel
Strand 5
A
74 75anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
414 416anti-parallel
Strand 3
A
391 392anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
320 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il