Analysis of interatomic Contacts of Structural Units in PDB entry:
5YSO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YSO entry

There are 3 chains in PDB entry 5YSO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 234GLU 455
B
 PRO 233ALA 456
C
 ASN 235ILE 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5YSO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
235 244Right-handed alpha
Helix 2
AA2
A
260 285Right-handed alpha
Helix 3
AA3
A
288 292Right-handed 310
Helix 4
AA4
A
293 318Right-handed alpha
Helix 5
AA5
A
334 340Right-handed alpha
Helix 6
AA6
A
342 359Right-handed alpha
Helix 7
AA7
A
362 376Right-handed alpha
Helix 8
AA8
A
384 407Right-handed alpha
Helix 9
AA9
A
412 420Right-handed alpha
Helix 10
AB1
A
420 438Right-handed alpha
Helix 11
AB2
A
445 455Right-handed alpha
Helix 12
AB3
B
235 244Right-handed alpha
Helix 13
AB4
B
260 285Right-handed alpha
Helix 14
AB5
B
293 317Right-handed alpha
Helix 15
AB6
B
333 340Right-handed alpha
Helix 16
AB7
B
342 360Right-handed alpha
Helix 17
AB8
B
362 376Right-handed alpha
Helix 18
AB9
B
384 407Right-handed alpha
Helix 19
AC1
B
412 419Right-handed alpha
Helix 20
AC2
B
420 438Right-handed alpha
Helix 21
AC3
B
445 455Right-handed alpha
Helix 22
AC4
C
236 245Right-handed alpha
Helix 23
AC5
C
260 286Right-handed alpha
Helix 24
AC6
C
293 317Right-handed alpha
Helix 25
AC7
C
333 341Right-handed alpha
Helix 26
AC8
C
342 359Right-handed alpha
Helix 27
AC9
C
362 376Right-handed alpha
Helix 28
AD1
C
384 407Right-handed alpha
Helix 29
AD2
C
412 419Right-handed alpha
Helix 30
AD3
C
420 437Right-handed alpha
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There are 3 sheets in PDB entry 5YSO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 327first strand
Strand 2
A
330 333anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 327first strand
Strand 2
B
330 332anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 327first strand
Strand 2
C
330 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il