Analysis of interatomic Contacts of Structural Units in PDB entry:
5YSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YSS entry

There are 4 chains in PDB entry 5YSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLN 256
B
 ASN 2GLN 256
C
 ASN 2GLN 256
D
 ASN 2GLN 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5YSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
39 49Right-handed alpha
Helix 3
AA3
A
63 78Right-handed alpha
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
100 112Right-handed alpha
Helix 6
AA6
A
112 130Right-handed alpha
Helix 7
AA7
A
139 143Right-handed 310
Helix 8
AA8
A
149 170Right-handed alpha
Helix 9
AA9
A
187 200Right-handed alpha
Helix 10
AB1
A
203 213Right-handed alpha
Helix 11
AB2
A
223 235Right-handed alpha
Helix 12
AB3
A
236 240Right-handed 310
Helix 13
AB4
B
15 28Right-handed alpha
Helix 14
AB5
B
39 49Right-handed alpha
Helix 15
AB6
B
63 79Right-handed alpha
Helix 16
AB7
B
95 99Right-handed 310
Helix 17
AB8
B
100 112Right-handed alpha
Helix 18
AB9
B
112 129Right-handed alpha
Helix 19
AC1
B
139 143Right-handed 310
Helix 20
AC2
B
149 170Right-handed alpha
Helix 21
AC3
B
187 201Right-handed alpha
Helix 22
AC4
B
203 213Right-handed alpha
Helix 23
AC5
B
223 236Right-handed alpha
Helix 24
AC6
B
237 240Right-handed 310
Helix 25
AC7
C
15 28Right-handed alpha
Helix 26
AC8
C
39 49Right-handed alpha
Helix 27
AC9
C
63 79Right-handed alpha
Helix 28
AD1
C
100 112Right-handed alpha
Helix 29
AD2
C
112 129Right-handed alpha
Helix 30
AD3
C
139 143Right-handed 310
Helix 31
AD4
C
149 170Right-handed alpha
Helix 32
AD5
C
187 199Right-handed alpha
Helix 33
AD6
C
203 213Right-handed alpha
Helix 34
AD7
C
223 236Right-handed alpha
Helix 35
AD8
C
237 240Right-handed 310
Helix 36
AD9
D
15 28Right-handed alpha
Helix 37
AE1
D
39 49Right-handed alpha
Helix 38
AE2
D
63 79Right-handed alpha
Helix 39
AE3
D
95 99Right-handed 310
Helix 40
AE4
D
100 112Right-handed alpha
Helix 41
AE5
D
112 129Right-handed alpha
Helix 42
AE6
D
139 143Right-handed 310
Helix 43
AE7
D
149 170Right-handed alpha
Helix 44
AE8
D
187 199Right-handed alpha
Helix 45
AE9
D
203 214Right-handed alpha
Helix 46
AF1
D
223 236Right-handed alpha
Helix 47
AF2
D
237 240Right-handed 310
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There are 4 sheets in PDB entry 5YSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
31 35parallel
Strand 3
A
7 10parallel
Strand 4
A
83 86parallel
Strand 5
A
132 137parallel
Strand 6
A
175 182parallel
Strand 7
A
246 249parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
31 35parallel
Strand 3
B
7 10parallel
Strand 4
B
83 86parallel
Strand 5
B
132 137parallel
Strand 6
B
175 182parallel
Strand 7
B
246 249parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 57first strand
Strand 2
C
31 35parallel
Strand 3
C
7 10parallel
Strand 4
C
83 86parallel
Strand 5
C
132 137parallel
Strand 6
C
175 182parallel
Strand 7
C
246 249parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 56first strand
Strand 2
D
31 34parallel
Strand 3
D
7 10parallel
Strand 4
D
83 86parallel
Strand 5
D
132 137parallel
Strand 6
D
175 182parallel
Strand 7
D
246 249parallel
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