Analysis of interatomic Contacts of Structural Units in PDB entry:
5YSZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YSZ entry

There is 1 chain in PDB entry 5YSZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6GLY 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5YSZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
19 28Right-handed alpha
Helix 3
AA3
A
34 49Right-handed alpha
Helix 4
AA4
A
74 81Right-handed alpha
Helix 5
AA5
A
82 98Right-handed alpha
Helix 6
AA6
A
109 121Right-handed alpha
Helix 7
AA7
A
138 147Right-handed alpha
Helix 8
AA8
A
160 164Right-handed 310
Helix 9
AA9
A
170 185Right-handed alpha
Helix 10
AB1
A
199 216Right-handed alpha
Helix 11
AB2
A
221 223Right-handed 310
Helix 12
AB3
A
231 246Right-handed alpha
Helix 13
AB4
A
256 270Right-handed alpha
Helix 14
AB5
A
286 291Right-handed alpha
Helix 15
AB6
A
302 320Right-handed alpha
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There are 2 sheets in PDB entry 5YSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 106first strand
Strand 2
A
66 71parallel
Strand 3
A
127 131parallel
Strand 4
A
150 153parallel
Strand 5
A
166 169parallel
Strand 6
A
327 330parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
190 194parallel
Strand 3
A
251 254parallel
Strand 4
A
279 283parallel
Strand 5
A
297 300parallel
Strand 6
A
333 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il