Analysis of interatomic Contacts of Structural Units in PDB entry:
5YT0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YT0 entry

There are 2 chains in PDB entry 5YT0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 14ARG 358
B
 ASP 101PHE 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5YT0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 43Right-handed alpha
Helix 2
AA2
A
60 67Right-handed alpha
Helix 3
AA3
A
68 71Right-handed 310
Helix 4
AA4
A
90 96Right-handed alpha
Helix 5
AA5
A
119 133Right-handed alpha
Helix 6
AA6
A
142 146Right-handed 310
Helix 7
AA7
A
156 163Right-handed alpha
Helix 8
AA8
A
165 186Right-handed alpha
Helix 9
AA9
A
194 196Right-handed 310
Helix 10
AB1
A
215 231Right-handed alpha
Helix 11
AB2
A
231 236Right-handed alpha
Helix 12
AB3
A
339 358Right-handed alpha
Helix 13
AB4
B
104 109Right-handed 310
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There are 3 sheets in PDB entry 5YT0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
82 86anti-parallel
Strand 4
A
18 23parallel
Strand 5
A
107 113parallel
Strand 6
A
136 141parallel
Strand 7
A
203 207parallel
Strand 8
A
190 192parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 286first strand
Strand 2
A
273 278anti-parallel
Strand 3
A
333 337anti-parallel
Strand 4
A
243 252anti-parallel
Strand 5
A
256 265anti-parallel
Strand 6
A
316 321anti-parallel
Strand 7
A
289 292anti-parallel
Strand 8
A
307 309anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
311 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il