Analysis of interatomic Contacts of Structural Units in PDB entry:
5YT3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YT3 entry

There are 4 chains in PDB entry 5YT3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 39ASN 382
B
 LEU 40ASN 382
C
 LEU 40ASN 382
D
 GLU 39ASN 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 5YT3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 59Right-handed alpha
Helix 2
AA2
A
64 66Right-handed 310
Helix 3
AA3
A
104 116Right-handed alpha
Helix 4
AA4
A
117 121Right-handed 310
Helix 5
AA5
A
150 159Right-handed alpha
Helix 6
AA6
A
162 185Right-handed alpha
Helix 7
AA7
A
192 194Right-handed 310
Helix 8
AA8
A
231 236Right-handed alpha
Helix 9
AA9
A
241 259Right-handed alpha
Helix 10
AB1
A
267 273Right-handed alpha
Helix 11
AB2
A
309 320Right-handed alpha
Helix 12
AB3
A
331 342Right-handed alpha
Helix 13
AB4
A
351 356Right-handed alpha
Helix 14
AB5
A
358 367Right-handed alpha
Helix 15
AB6
A
370 380Right-handed alpha
Helix 16
AB7
B
43 58Right-handed alpha
Helix 17
AB8
B
59 61Right-handed 310
Helix 18
AB9
B
64 66Right-handed 310
Helix 19
AC1
B
104 120Right-handed alpha
Helix 20
AC2
B
151 159Right-handed alpha
Helix 21
AC3
B
162 182Right-handed alpha
Helix 22
AC4
B
183 184Right-handed 310
Helix 23
AC5
B
185 189Right-handed 310
Helix 24
AC6
B
192 194Right-handed 310
Helix 25
AC7
B
210 221Right-handed alpha
Helix 26
AC8
B
231 236Right-handed alpha
Helix 27
AC9
B
241 259Right-handed alpha
Helix 28
AD1
B
269 274Right-handed alpha
Helix 29
AD2
B
310 319Right-handed alpha
Helix 30
AD3
B
331 342Right-handed alpha
Helix 31
AD4
B
354 357Right-handed 310
Helix 32
AD5
B
358 367Right-handed alpha
Helix 33
AD6
B
370 380Right-handed alpha
Helix 34
AD7
C
45 59Right-handed alpha
Helix 35
AD8
C
64 66Right-handed 310
Helix 36
AD9
C
107 116Right-handed alpha
Helix 37
AE1
C
117 121Right-handed 310
Helix 38
AE2
C
151 159Right-handed alpha
Helix 39
AE3
C
162 185Right-handed alpha
Helix 40
AE4
C
192 194Right-handed 310
Helix 41
AE5
C
241 259Right-handed alpha
Helix 42
AE6
C
267 273Right-handed alpha
Helix 43
AE7
C
309 320Right-handed alpha
Helix 44
AE8
C
331 343Right-handed alpha
Helix 45
AE9
C
351 356Right-handed alpha
Helix 46
AF1
C
358 366Right-handed alpha
Helix 47
AF2
C
370 380Right-handed alpha
Helix 48
AF3
D
43 57Right-handed alpha
Helix 49
AF4
D
64 66Right-handed 310
Helix 50
AF5
D
105 120Right-handed alpha
Helix 51
AF6
D
151 159Right-handed alpha
Helix 52
AF7
D
162 183Right-handed alpha
Helix 53
AF8
D
185 189Right-handed 310
Helix 54
AF9
D
192 194Right-handed 310
Helix 55
AG1
D
211 221Right-handed alpha
Helix 56
AG2
D
231 236Right-handed alpha
Helix 57
AG3
D
241 259Right-handed alpha
Helix 58
AG4
D
310 320Right-handed alpha
Helix 59
AG5
D
331 342Right-handed alpha
Helix 60
AG6
D
351 356Right-handed alpha
Helix 61
AG7
D
358 367Right-handed alpha
Helix 62
AG8
D
370 380Right-handed alpha
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There are 8 sheets in PDB entry 5YT3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 76first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
140 144anti-parallel
Strand 5
A
129 133anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
204 206anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 76first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
138 144anti-parallel
Strand 5
B
129 135anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
196 198anti-parallel
Strand 3
B
204 206anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 76first strand
Strand 2
C
81 87anti-parallel
Strand 3
C
93 99anti-parallel
Strand 4
C
138 144anti-parallel
Strand 5
C
129 135anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 150first strand
Strand 2
C
196 198anti-parallel
Strand 3
C
204 206anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 77first strand
Strand 2
D
80 87anti-parallel
Strand 3
D
93 99anti-parallel
Strand 4
D
138 144anti-parallel
Strand 5
D
129 135anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
149 150first strand
Strand 2
D
196 198anti-parallel
Strand 3
D
204 206anti-parallel
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