Analysis of interatomic Contacts of Structural Units in PDB entry:
5YU4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YU4 entry

There are 4 chains in PDB entry 5YU4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 344
B
 MET 1GLN 344
C
 MET 1GLN 344
D
 MET 1GLN 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5YU4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
19 40Right-handed alpha
Helix 3
AA3
A
84 90Right-handed alpha
Helix 4
AA4
A
114 134Right-handed alpha
Helix 5
AA5
A
147 161Right-handed alpha
Helix 6
AA6
A
172 178Right-handed alpha
Helix 7
AA7
A
178 184Right-handed alpha
Helix 8
AA8
A
185 187Right-handed 310
Helix 9
AA9
A
194 202Right-handed alpha
Helix 10
AB1
A
244 251Right-handed alpha
Helix 11
AB2
A
257 265Right-handed alpha
Helix 12
AB3
A
266 270Right-handed 310
Helix 13
AB4
A
271 275Right-handed 310
Helix 14
AB5
A
278 285Right-handed alpha
Helix 15
AB6
A
286 289Right-handed 310
Helix 16
AB7
A
291 295Right-handed 310
Helix 17
AB8
A
304 322Right-handed alpha
Helix 18
AB9
B
7 19Right-handed alpha
Helix 19
AC1
B
19 40Right-handed alpha
Helix 20
AC2
B
84 90Right-handed alpha
Helix 21
AC3
B
114 134Right-handed alpha
Helix 22
AC4
B
147 161Right-handed alpha
Helix 23
AC5
B
172 184Right-handed alpha
Helix 24
AC6
B
185 187Right-handed 310
Helix 25
AC7
B
194 202Right-handed alpha
Helix 26
AC8
B
244 251Right-handed alpha
Helix 27
AC9
B
257 265Right-handed alpha
Helix 28
AD1
B
266 270Right-handed 310
Helix 29
AD2
B
271 275Right-handed 310
Helix 30
AD3
B
278 285Right-handed alpha
Helix 31
AD4
B
286 291Right-handed alpha
Helix 32
AD5
B
304 322Right-handed alpha
Helix 33
AD6
C
7 19Right-handed alpha
Helix 34
AD7
C
19 40Right-handed alpha
Helix 35
AD8
C
84 90Right-handed alpha
Helix 36
AD9
C
114 134Right-handed alpha
Helix 37
AE1
C
147 161Right-handed alpha
Helix 38
AE2
C
172 178Right-handed alpha
Helix 39
AE3
C
178 184Right-handed alpha
Helix 40
AE4
C
185 187Right-handed 310
Helix 41
AE5
C
194 202Right-handed alpha
Helix 42
AE6
C
244 250Right-handed alpha
Helix 43
AE7
C
257 265Right-handed alpha
Helix 44
AE8
C
266 270Right-handed 310
Helix 45
AE9
C
271 275Right-handed 310
Helix 46
AF1
C
278 285Right-handed alpha
Helix 47
AF2
C
286 291Right-handed alpha
Helix 48
AF3
C
304 322Right-handed alpha
Helix 49
AF4
D
7 19Right-handed alpha
Helix 50
AF5
D
19 40Right-handed alpha
Helix 51
AF6
D
84 90Right-handed alpha
Helix 52
AF7
D
114 134Right-handed alpha
Helix 53
AF8
D
147 161Right-handed alpha
Helix 54
AF9
D
172 184Right-handed alpha
Helix 55
AG1
D
185 187Right-handed 310
Helix 56
AG2
D
194 202Right-handed alpha
Helix 57
AG3
D
244 250Right-handed alpha
Helix 58
AG4
D
257 265Right-handed alpha
Helix 59
AG5
D
266 270Right-handed 310
Helix 60
AG6
D
271 275Right-handed 310
Helix 61
AG7
D
278 285Right-handed alpha
Helix 62
AG8
D
286 290Right-handed 310
Helix 63
AG9
D
291 295Right-handed 310
Helix 64
AH1
D
304 322Right-handed alpha
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There are 8 sheets in PDB entry 5YU4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
60 69anti-parallel
Strand 3
A
73 81anti-parallel
Strand 4
A
94 102anti-parallel
Strand 5
A
108 113anti-parallel
Strand 6
A
3 6parallel
Strand 7
A
326 328anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
165 169parallel
Strand 3
A
140 144parallel
Strand 4
A
204 207parallel
Strand 5
A
229 232parallel
Strand 6
A
297 300parallel
Strand 7
A
252 255parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
60 69anti-parallel
Strand 3
B
73 81anti-parallel
Strand 4
B
94 102anti-parallel
Strand 5
B
108 113anti-parallel
Strand 6
B
3 6parallel
Strand 7
B
326 328anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 192first strand
Strand 2
B
165 169parallel
Strand 3
B
140 144parallel
Strand 4
B
204 207parallel
Strand 5
B
229 232parallel
Strand 6
B
297 300parallel
Strand 7
B
252 255parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 54first strand
Strand 2
C
60 68anti-parallel
Strand 3
C
73 81anti-parallel
Strand 4
C
94 102anti-parallel
Strand 5
C
108 113anti-parallel
Strand 6
C
3 6parallel
Strand 7
C
326 328anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 192first strand
Strand 2
C
165 169parallel
Strand 3
C
140 144parallel
Strand 4
C
204 207parallel
Strand 5
C
229 232parallel
Strand 6
C
297 300parallel
Strand 7
C
252 255parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 54first strand
Strand 2
D
60 69anti-parallel
Strand 3
D
73 81anti-parallel
Strand 4
D
94 102anti-parallel
Strand 5
D
108 113anti-parallel
Strand 6
D
3 6parallel
Strand 7
D
326 328anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
189 192first strand
Strand 2
D
165 169parallel
Strand 3
D
140 144parallel
Strand 4
D
204 207parallel
Strand 5
D
229 232parallel
Strand 6
D
297 300parallel
Strand 7
D
252 255parallel
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