Analysis of interatomic Contacts of Structural Units in PDB entry:
5YU5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YU5 entry

There are 2 chains in PDB entry 5YU5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 37	LEU 483
B	SER 35	LEU 486

There are 14 helices in PDB entry 5YU5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	87	Right-handed alpha
Helix 2	AA2	A	91	102	Right-handed alpha
Helix 3	AA3	A	102	107	Right-handed alpha
Helix 4	AA4	A	264	269	Right-handed alpha
Helix 5	AA5	A	281	286	Right-handed alpha
Helix 6	AA6	A	301	312	Right-handed alpha
Helix 7	AA7	A	414	418	Right-handed 310
Helix 8	AA8	B	79	87	Right-handed alpha
Helix 9	AA9	B	91	102	Right-handed alpha
Helix 10	AB1	B	102	107	Right-handed alpha
Helix 11	AB2	B	264	269	Right-handed alpha
Helix 12	AB3	B	281	286	Right-handed alpha
Helix 13	AB4	B	301	312	Right-handed alpha
Helix 14	AB5	B	414	418	Right-handed 310

There are 20 sheets in PDB entry 5YU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	131	first strand
Strand 2	A	38	44	anti-parallel
Strand 3	A	174	177	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	180	183	parallel
Strand 3	A	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	A	140	147	anti-parallel
Strand 4	A	158	161	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	137	138	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	209	217	anti-parallel
Strand 4	A	316	325	anti-parallel
Strand 5	A	249	259	anti-parallel
Strand 6	A	262	263	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	204	first strand
Strand 2	A	355	367	parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	403	404	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	204	first strand
Strand 2	A	355	367	parallel
Strand 3	A	473	479	parallel
Strand 4	A	452	454	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	276	first strand
Strand 2	A	290	295	anti-parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	338	344	anti-parallel
Strand 5	A	347	352	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	412	first strand
Strand 2	A	389	395	anti-parallel
Strand 3	A	378	384	anti-parallel
Strand 4	A	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	412	first strand
Strand 2	A	389	395	anti-parallel
Strand 3	A	378	384	anti-parallel
Strand 4	A	439	447	anti-parallel
Strand 5	A	458	463	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	131	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	174	177	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	180	183	parallel
Strand 3	B	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	140	147	anti-parallel
Strand 4	B	158	161	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	137	138	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	185	191	anti-parallel
Strand 3	B	209	217	anti-parallel
Strand 4	B	316	325	anti-parallel
Strand 5	B	249	259	anti-parallel
Strand 6	B	262	263	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	204	first strand
Strand 2	B	355	367	parallel
Strand 3	B	431	436	anti-parallel
Strand 4	B	403	404	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	204	first strand
Strand 2	B	355	367	parallel
Strand 3	B	473	479	parallel
Strand 4	B	452	454	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	290	295	anti-parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	338	344	anti-parallel
Strand 5	B	347	352	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	412	first strand
Strand 2	B	389	395	anti-parallel
Strand 3	B	378	384	anti-parallel
Strand 4	B	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	412	first strand
Strand 2	B	389	395	anti-parallel
Strand 3	B	378	384	anti-parallel
Strand 4	B	439	447	anti-parallel
Strand 5	B	458	463	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YU5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YU5