Analysis of interatomic Contacts of Structural Units in PDB entry:
5YU6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YU6 entry

There are 3 chains in PDB entry 5YU6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5PRO 1136
E
 UNK 1305UNK 1317
B
 PRO 7PHE 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are136 helices in PDB entry 5YU6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 21Right-handed alpha
Helix 2
AA2
A
26 44Right-handed alpha
Helix 3
AA3
A
46 55Right-handed alpha
Helix 4
AA4
A
60 78Right-handed alpha
Helix 5
AA5
A
83 101Right-handed alpha
Helix 6
AA6
A
109 128Right-handed alpha
Helix 7
AA7
A
134 144Right-handed alpha
Helix 8
AA8
A
146 165Right-handed alpha
Helix 9
AA9
A
171 185Right-handed alpha
Helix 10
AB1
A
185 207Right-handed alpha
Helix 11
AB2
A
213 232Right-handed alpha
Helix 12
AB3
A
239 244Right-handed alpha
Helix 13
AB4
A
244 257Right-handed alpha
Helix 14
AB5
A
260 276Right-handed alpha
Helix 15
AB6
A
280 285Right-handed alpha
Helix 16
AB7
A
286 291Right-handed 310
Helix 17
AB8
A
292 304Right-handed alpha
Helix 18
AB9
A
312 339Right-handed alpha
Helix 19
AC1
A
348 361Right-handed alpha
Helix 20
AC2
A
364 380Right-handed alpha
Helix 21
AC3
A
387 406Right-handed alpha
Helix 22
AC4
A
417 426Right-handed alpha
Helix 23
AC5
A
428 454Right-handed alpha
Helix 24
AC6
A
454 471Right-handed alpha
Helix 25
AC7
A
497 521Right-handed alpha
Helix 26
AC8
A
527 541Right-handed alpha
Helix 27
AC9
A
545 560Right-handed alpha
Helix 28
AD1
A
561 565Right-handed 310
Helix 29
AD2
A
566 568Right-handed 310
Helix 30
AD3
A
569 582Right-handed alpha
Helix 31
AD4
A
594 615Right-handed alpha
Helix 32
AD5
A
615 620Right-handed alpha
Helix 33
AD6
A
622 636Right-handed alpha
Helix 34
AD7
A
641 657Right-handed alpha
Helix 35
AD8
A
658 660Right-handed 310
Helix 36
AD9
A
661 681Right-handed alpha
Helix 37
AE1
A
682 691Right-handed alpha
Helix 38
AE2
A
691 700Right-handed alpha
Helix 39
AE3
A
711 735Right-handed alpha
Helix 40
AE4
A
740 747Right-handed alpha
Helix 41
AE5
A
765 787Right-handed alpha
Helix 42
AE6
A
788 793Right-handed alpha
Helix 43
AE7
A
806 814Right-handed alpha
Helix 44
AE8
A
831 858Right-handed alpha
Helix 45
AE9
A
858 864Right-handed alpha
Helix 46
AF1
A
867 876Right-handed alpha
Helix 47
AF2
A
884 895Right-handed alpha
Helix 48
AF3
A
895 903Right-handed alpha
Helix 49
AF4
A
904 908Right-handed 310
Helix 50
AF5
A
911 937Right-handed alpha
Helix 51
AF6
A
953 978Right-handed alpha
Helix 52
AF7
A
1012 1020Right-handed alpha
Helix 53
AF8
A
1021 1035Right-handed alpha
Helix 54
AF9
A
1036 1038Right-handed 310
Helix 55
AG1
A
1040 1051Right-handed alpha
Helix 56
AG2
A
1051 1059Right-handed alpha
Helix 57
AG3
A
1067 1083Right-handed alpha
Helix 58
AG4
A
1086 1105Right-handed alpha
Helix 59
AG5
A
1109 1117Right-handed alpha
Helix 60
AG6
A
1122 1135Right-handed alpha
Helix 61
AG7
E
1306 1316Right-handed alpha
Helix 62
AG8
B
22 33Right-handed alpha
Helix 63
AG9
B
76 81Right-handed 310
Helix 64
AH1
B
94 112Right-handed alpha
Helix 65
AH2
B
132 136Right-handed 310
Helix 66
AH3
B
137 142Right-handed alpha
Helix 67
AH4
B
158 170Right-handed alpha
Helix 68
AH5
C
5 21Right-handed alpha
Helix 69
AH6
C
27 42Right-handed alpha
Helix 70
AH7
C
46 55Right-handed alpha
Helix 71
AH8
C
60 78Right-handed alpha
Helix 72
AH9
C
83 101Right-handed alpha
Helix 73
AI1
C
109 132Right-handed alpha
Helix 74
AI2
C
134 146Right-handed alpha
Helix 75
AI3
C
146 165Right-handed alpha
Helix 76
AI4
C
171 185Right-handed alpha
Helix 77
AI5
C
185 207Right-handed alpha
Helix 78
AI6
C
213 235Right-handed alpha
Helix 79
AI7
C
239 244Right-handed alpha
Helix 80
AI8
C
244 258Right-handed alpha
Helix 81
AI9
C
263 276Right-handed alpha
Helix 82
AJ1
C
280 285Right-handed alpha
Helix 83
AJ2
C
286 291Right-handed 310
Helix 84
AJ3
C
292 308Right-handed alpha
Helix 85
AJ4
C
312 340Right-handed alpha
Helix 86
AJ5
C
348 362Right-handed alpha
Helix 87
AJ6
C
364 380Right-handed alpha
Helix 88
AJ7
C
387 406Right-handed alpha
Helix 89
AJ8
C
417 426Right-handed alpha
Helix 90
AJ9
C
428 454Right-handed alpha
Helix 91
AK1
C
454 472Right-handed alpha
Helix 92
AK2
C
497 521Right-handed alpha
Helix 93
AK3
C
527 541Right-handed alpha
Helix 94
AK4
C
545 560Right-handed alpha
Helix 95
AK5
C
561 565Right-handed 310
Helix 96
AK6
C
566 568Right-handed 310
Helix 97
AK7
C
569 582Right-handed alpha
Helix 98
AK8
C
594 615Right-handed alpha
Helix 99
AK9
C
615 620Right-handed alpha
Helix 100
AL1
C
622 636Right-handed alpha
Helix 101
AL2
C
641 657Right-handed alpha
Helix 102
AL3
C
658 660Right-handed 310
Helix 103
AL4
C
661 681Right-handed alpha
Helix 104
AL5
C
682 689Right-handed alpha
Helix 105
AL6
C
691 700Right-handed alpha
Helix 106
AL7
C
712 735Right-handed alpha
Helix 107
AL8
C
740 747Right-handed alpha
Helix 108
AL9
C
765 786Right-handed alpha
Helix 109
AM1
C
788 793Right-handed alpha
Helix 110
AM2
C
799 804Right-handed 310
Helix 111
AM3
C
806 815Right-handed alpha
Helix 112
AM4
C
831 858Right-handed alpha
Helix 113
AM5
C
859 864Right-handed alpha
Helix 114
AM6
C
867 876Right-handed alpha
Helix 115
AM7
C
879 883Right-handed 310
Helix 116
AM8
C
888 895Right-handed alpha
Helix 117
AM9
C
895 902Right-handed alpha
Helix 118
AN1
C
904 908Right-handed 310
Helix 119
AN2
C
911 935Right-handed alpha
Helix 120
AN3
C
953 978Right-handed alpha
Helix 121
AN4
C
1012 1020Right-handed alpha
Helix 122
AN5
C
1022 1035Right-handed alpha
Helix 123
AN6
C
1036 1038Right-handed 310
Helix 124
AN7
C
1041 1051Right-handed alpha
Helix 125
AN8
C
1051 1059Right-handed alpha
Helix 126
AN9
C
1065 1083Right-handed alpha
Helix 127
AO1
C
1086 1105Right-handed alpha
Helix 128
AO2
C
1110 1116Right-handed alpha
Helix 129
AO3
C
1122 1135Right-handed alpha
Helix 130
AO4
F
1306 1316Right-handed alpha
Helix 131
AO5
D
22 32Right-handed alpha
Helix 132
AO6
D
76 81Right-handed 310
Helix 133
AO7
D
94 112Right-handed alpha
Helix 134
AO8
D
132 136Right-handed 310
Helix 135
AO9
D
137 142Right-handed alpha
Helix 136
AP1
D
158 170Right-handed alpha
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There are 4 sheets in PDB entry 5YU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
750 753first strand
Strand 2
A
759 761anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 54first strand
Strand 2
B
57 66anti-parallel
Strand 3
B
9 17parallel
Strand 4
B
85 91parallel
Strand 5
B
117 122parallel
Strand 6
B
145 148parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
750 753first strand
Strand 2
C
759 761anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 54first strand
Strand 2
D
57 66anti-parallel
Strand 3
D
9 16parallel
Strand 4
D
85 91parallel
Strand 5
D
117 122parallel
Strand 6
D
145 148parallel
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