Analysis of interatomic Contacts of Structural Units in PDB entry:
5YU7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YU7 entry

There is 1 chain in PDB entry 5YU7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5PHE 1179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 5YU7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 21Right-handed alpha
Helix 2
AA2
A
26 44Right-handed alpha
Helix 3
AA3
A
46 55Right-handed alpha
Helix 4
AA4
A
60 77Right-handed alpha
Helix 5
AA5
A
83 100Right-handed alpha
Helix 6
AA6
A
109 132Right-handed alpha
Helix 7
AA7
A
134 146Right-handed alpha
Helix 8
AA8
A
146 166Right-handed alpha
Helix 9
AA9
A
171 185Right-handed alpha
Helix 10
AB1
A
185 207Right-handed alpha
Helix 11
AB2
A
213 236Right-handed alpha
Helix 12
AB3
A
239 244Right-handed alpha
Helix 13
AB4
A
248 258Right-handed alpha
Helix 14
AB5
A
263 276Right-handed alpha
Helix 15
AB6
A
281 291Right-handed 310
Helix 16
AB7
A
292 309Right-handed alpha
Helix 17
AB8
A
314 337Right-handed alpha
Helix 18
AB9
A
348 361Right-handed alpha
Helix 19
AC1
A
364 371Right-handed alpha
Helix 20
AC2
A
371 381Right-handed alpha
Helix 21
AC3
A
383 386Right-handed 310
Helix 22
AC4
A
387 406Right-handed alpha
Helix 23
AC5
A
417 426Right-handed alpha
Helix 24
AC6
A
428 452Right-handed alpha
Helix 25
AC7
A
454 472Right-handed alpha
Helix 26
AC8
A
497 521Right-handed alpha
Helix 27
AC9
A
522 526Right-handed 310
Helix 28
AD1
A
527 541Right-handed alpha
Helix 29
AD2
A
545 560Right-handed alpha
Helix 30
AD3
A
561 565Right-handed 310
Helix 31
AD4
A
566 568Right-handed 310
Helix 32
AD5
A
569 582Right-handed alpha
Helix 33
AD6
A
594 615Right-handed alpha
Helix 34
AD7
A
615 620Right-handed alpha
Helix 35
AD8
A
622 636Right-handed alpha
Helix 36
AD9
A
641 657Right-handed alpha
Helix 37
AE1
A
658 660Right-handed 310
Helix 38
AE2
A
661 681Right-handed alpha
Helix 39
AE3
A
682 691Right-handed alpha
Helix 40
AE4
A
691 700Right-handed alpha
Helix 41
AE5
A
711 735Right-handed alpha
Helix 42
AE6
A
740 747Right-handed alpha
Helix 43
AE7
A
765 787Right-handed alpha
Helix 44
AE8
A
788 793Right-handed alpha
Helix 45
AE9
A
806 814Right-handed alpha
Helix 46
AF1
A
831 858Right-handed alpha
Helix 47
AF2
A
858 864Right-handed alpha
Helix 48
AF3
A
867 876Right-handed alpha
Helix 49
AF4
A
884 895Right-handed alpha
Helix 50
AF5
A
895 902Right-handed alpha
Helix 51
AF6
A
907 936Right-handed alpha
Helix 52
AF7
A
953 978Right-handed alpha
Helix 53
AF8
A
1012 1020Right-handed alpha
Helix 54
AF9
A
1022 1035Right-handed alpha
Helix 55
AG1
A
1036 1038Right-handed 310
Helix 56
AG2
A
1040 1051Right-handed alpha
Helix 57
AG3
A
1053 1058Right-handed alpha
Helix 58
AG4
A
1059 1067Right-handed alpha
Helix 59
AG5
A
1068 1083Right-handed alpha
Helix 60
AG6
A
1086 1100Right-handed alpha
Helix 61
AG7
A
1100 1105Right-handed alpha
Helix 62
AG8
A
1111 1116Right-handed alpha
Helix 63
AG9
A
1122 1135Right-handed alpha
Helix 64
AH1
A
1146 1151Right-handed alpha
Helix 65
AH2
A
1166 1172Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5YU7.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
750 753first strand
Strand 2
A
759 761anti-parallel
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