Analysis of interatomic Contacts of Structural Units in PDB entry:
5YUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YUB entry

There is 1 chain in PDB entry 5YUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 999LYS 1227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5YUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
999 1010Right-handed alpha
Helix 2
AA2
A
1011 1032Right-handed alpha
Helix 3
AA3
A
1034 1067Right-handed alpha
Helix 4
AA4
A
1068 1073Right-handed 310
Helix 5
AA5
A
1074 1089Right-handed alpha
Helix 6
AA6
A
1096 1102Right-handed alpha
Helix 7
AA7
A
1103 1106Right-handed 310
Helix 8
AA8
A
1107 1113Right-handed alpha
Helix 9
AA9
A
1113 1126Right-handed alpha
Helix 10
AB1
A
1130 1153Right-handed alpha
Helix 11
AB2
A
1156 1161Right-handed alpha
Helix 12
AB3
A
1162 1175Right-handed alpha
Helix 13
AB4
A
1183 1188Right-handed alpha
Helix 14
AB5
A
1189 1190Right-handed 310
Helix 15
AB6
A
1191 1193Right-handed 310
Helix 16
AB7
A
1194 1227Right-handed alpha
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There are no sheets in PDB entry 5YUB
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