Analysis of interatomic Contacts of Structural Units in PDB entry:
5YUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YUD entry

There are 2 chains in PDB entry 5YUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10GLU 1403
C
 ALA 421ARG 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 5YUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 25Right-handed 310
Helix 2
AA2
A
26 31Right-handed alpha
Helix 3
AA3
A
36 51Right-handed alpha
Helix 4
AA4
A
59 61Right-handed 310
Helix 5
AA5
A
62 67Right-handed alpha
Helix 6
AA6
A
77 85Right-handed alpha
Helix 7
AA7
A
112 121Right-handed alpha
Helix 8
AA8
A
144 149Right-handed alpha
Helix 9
AA9
A
158 164Right-handed alpha
Helix 10
AB1
A
165 168Right-handed 310
Helix 11
AB2
A
177 184Right-handed alpha
Helix 12
AB3
A
212 221Right-handed alpha
Helix 13
AB4
A
224 229Right-handed alpha
Helix 14
AB5
A
233 240Right-handed alpha
Helix 15
AB6
A
406 418Right-handed alpha
Helix 16
AB7
A
454 461Right-handed alpha
Helix 17
AB8
A
475 489Right-handed alpha
Helix 18
AB9
A
492 498Right-handed alpha
Helix 19
AC1
A
516 524Right-handed alpha
Helix 20
AC2
A
535 542Right-handed alpha
Helix 21
AC3
A
585 590Right-handed alpha
Helix 22
AC4
A
603 615Right-handed alpha
Helix 23
AC5
A
620 631Right-handed alpha
Helix 24
AC6
A
632 637Right-handed alpha
Helix 25
AC7
A
641 650Right-handed alpha
Helix 26
AC8
A
664 680Right-handed alpha
Helix 27
AC9
A
683 703Right-handed alpha
Helix 28
AD1
A
712 717Right-handed alpha
Helix 29
AD2
A
718 722Right-handed 310
Helix 30
AD3
A
723 728Right-handed alpha
Helix 31
AD4
A
745 760Right-handed alpha
Helix 32
AD5
A
769 777Right-handed alpha
Helix 33
AD6
A
781 787Right-handed alpha
Helix 34
AD7
A
789 800Right-handed alpha
Helix 35
AD8
A
803 815Right-handed alpha
Helix 36
AD9
A
830 835Right-handed 310
Helix 37
AE1
A
836 852Right-handed alpha
Helix 38
AE2
A
852 873Right-handed alpha
Helix 39
AE3
A
880 889Right-handed alpha
Helix 40
AE4
A
896 901Right-handed alpha
Helix 41
AE5
A
929 939Right-handed 310
Helix 42
AE6
A
956 978Right-handed alpha
Helix 43
AE7
A
988 993Right-handed alpha
Helix 44
AE8
A
1008 1012Right-handed 310
Helix 45
AE9
A
1013 1025Right-handed alpha
Helix 46
AF1
A
1039 1049Right-handed alpha
Helix 47
AF2
A
1069 1076Right-handed alpha
Helix 48
AF3
A
1143 1154Right-handed alpha
Helix 49
AF4
A
1155 1157Right-handed 310
Helix 50
AF5
A
1173 1178Right-handed alpha
Helix 51
AF6
A
1201 1205Right-handed 310
Helix 52
AF7
A
1220 1234Right-handed alpha
Helix 53
AF8
A
1247 1252Right-handed 310
Helix 54
AF9
A
1253 1258Right-handed alpha
Helix 55
AG1
A
1259 1262Right-handed 310
Helix 56
AG2
A
1277 1288Right-handed alpha
Helix 57
AG3
A
1306 1308Right-handed 310
Helix 58
AG4
A
1309 1314Right-handed alpha
Helix 59
AG5
A
1339 1344Right-handed alpha
Helix 60
AG6
A
1345 1351Right-handed alpha
Helix 61
AG7
A
1364 1374Right-handed alpha
Helix 62
AG8
A
1397 1402Right-handed 310
Helix 63
AG9
C
426 444Right-handed alpha
Helix 64
AH1
C
453 483Right-handed alpha
Helix 65
AH2
C
484 495Right-handed alpha
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There are 9 sheets in PDB entry 5YUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
95 96anti-parallel
Strand 3
A
103 104anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
195 197anti-parallel
Strand 3
A
202 204anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
A
598 599anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
576 582parallel
Strand 3
A
547 551parallel
Strand 4
A
502 504parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
730 731first strand
Strand 2
A
742 743anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
892 895first strand
Strand 2
A
913 919parallel
Strand 3
A
999 1006parallel
Strand 4
A
1027 1030parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
892 895first strand
Strand 2
A
913 919parallel
Strand 3
A
999 1006parallel
Strand 4
A
1032 1034parallel
Strand 5
A
1058 1060parallel
Strand 6
A
1082 1084parallel
Strand 7
A
1107 1109parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1134 1135first strand
Strand 2
A
1162 1163parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1296 1299first strand
Strand 2
A
1325 1328parallel
Strand 3
A
1357 1358parallel
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