Analysis of interatomic Contacts of Structural Units in PDB entry:
5YUQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YUQ entry

There are 2 chains in PDB entry 5YUQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 76LYS 445
B
 GLY 76LYS 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5YUQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 97Right-handed 310
Helix 2
AA2
A
117 131Right-handed alpha
Helix 3
AA3
A
142 145Right-handed 310
Helix 4
AA4
A
147 154Right-handed alpha
Helix 5
AA5
A
154 173Right-handed alpha
Helix 6
AA6
A
198 215Right-handed alpha
Helix 7
AA7
A
242 248Right-handed alpha
Helix 8
AA8
A
285 296Right-handed alpha
Helix 9
AA9
A
299 301Right-handed 310
Helix 10
AB1
A
362 368Right-handed alpha
Helix 11
AB2
A
369 373Right-handed 310
Helix 12
AB3
A
403 417Right-handed alpha
Helix 13
AB4
A
426 430Right-handed 310
Helix 14
AB5
A
434 439Right-handed alpha
Helix 15
AB6
A
440 445Right-handed 310
Helix 16
AB7
B
93 97Right-handed 310
Helix 17
AB8
B
117 131Right-handed alpha
Helix 18
AB9
B
142 145Right-handed 310
Helix 19
AC1
B
147 154Right-handed alpha
Helix 20
AC2
B
154 173Right-handed alpha
Helix 21
AC3
B
198 215Right-handed alpha
Helix 22
AC4
B
242 248Right-handed alpha
Helix 23
AC5
B
285 296Right-handed alpha
Helix 24
AC6
B
299 301Right-handed 310
Helix 25
AC7
B
362 368Right-handed alpha
Helix 26
AC8
B
369 373Right-handed 310
Helix 27
AC9
B
403 417Right-handed alpha
Helix 28
AD1
B
426 430Right-handed 310
Helix 29
AD2
B
434 439Right-handed alpha
Helix 30
AD3
B
440 445Right-handed 310
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There are 4 sheets in PDB entry 5YUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
99 107anti-parallel
Strand 3
A
134 140parallel
Strand 4
A
176 180parallel
Strand 5
A
219 224parallel
Strand 6
A
250 253parallel
Strand 7
A
303 308parallel
Strand 8
A
421 425parallel
Strand 9
A
79 84parallel
Strand 10
A
99 107parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
310 315anti-parallel
Strand 3
A
397 400anti-parallel
Strand 4
A
387 392anti-parallel
Strand 5
A
377 382anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
99 107anti-parallel
Strand 3
B
134 140parallel
Strand 4
B
176 180parallel
Strand 5
B
219 224parallel
Strand 6
B
250 253parallel
Strand 7
B
303 308parallel
Strand 8
B
421 425parallel
Strand 9
B
79 84parallel
Strand 10
B
99 107parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 361first strand
Strand 2
B
310 315anti-parallel
Strand 3
B
397 400anti-parallel
Strand 4
B
387 392anti-parallel
Strand 5
B
377 382anti-parallel
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