Analysis of interatomic Contacts of Structural Units in PDB entry:
5YUR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YUR entry

There are 6 chains in PDB entry 5YUR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 GLY 0PRO 341
A
 GLY 0PRO 341
G
 T 839 C 853
H
 G 862 C 873
B
 T 839 C 854
C
 C 857 C 873
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5YUR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
11 21Right-handed alpha
Helix 2
AA2
F
22 25Right-handed 310
Helix 3
AA3
F
34 38Right-handed 310
Helix 4
AA4
F
45 50Right-handed alpha
Helix 5
AA5
F
58 66Right-handed alpha
Helix 6
AA6
F
75 92Right-handed alpha
Helix 7
AA7
F
118 135Right-handed alpha
Helix 8
AA8
F
145 154Right-handed alpha
Helix 9
AA9
F
168 176Right-handed alpha
Helix 10
AB1
F
177 181Right-handed 310
Helix 11
AB2
F
185 194Right-handed alpha
Helix 12
AB3
F
199 205Right-handed alpha
Helix 13
AB4
F
207 216Right-handed alpha
Helix 14
AB5
F
216 226Right-handed alpha
Helix 15
AB6
F
255 278Right-handed alpha
Helix 16
AB7
F
308 324Right-handed alpha
Helix 17
AB8
A
11 20Right-handed alpha
Helix 18
AB9
A
21 25Right-handed 310
Helix 19
AC1
A
45 51Right-handed alpha
Helix 20
AC2
A
58 66Right-handed alpha
Helix 21
AC3
A
75 92Right-handed alpha
Helix 22
AC4
A
114 117Right-handed 310
Helix 23
AC5
A
118 135Right-handed alpha
Helix 24
AC6
A
145 156Right-handed alpha
Helix 25
AC7
A
168 175Right-handed alpha
Helix 26
AC8
A
177 181Right-handed 310
Helix 27
AC9
A
185 194Right-handed alpha
Helix 28
AD1
A
199 205Right-handed alpha
Helix 29
AD2
A
207 216Right-handed alpha
Helix 30
AD3
A
216 226Right-handed alpha
Helix 31
AD4
A
255 278Right-handed alpha
Helix 32
AD5
A
308 324Right-handed alpha
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There are 6 sheets in PDB entry 5YUR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
97 101first strand
Strand 2
F
104 108anti-parallel
Strand 3
F
4 9anti-parallel
Strand 4
F
138 143anti-parallel
Strand 5
F
161 163parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
41 44first strand
Strand 2
F
29 32anti-parallel
Strand 3
F
70 72parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
242 253first strand
Strand 2
F
329 337anti-parallel
Strand 3
F
285 292anti-parallel
Strand 4
F
297 303anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
4 9anti-parallel
Strand 4
A
138 143anti-parallel
Strand 5
A
161 163parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
70 72parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 253first strand
Strand 2
A
329 337anti-parallel
Strand 3
A
285 292anti-parallel
Strand 4
A
297 303anti-parallel
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