Analysis of interatomic Contacts of Structural Units in PDB entry:
5YVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YVG entry

There are 4 chains in PDB entry 5YVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1TYR 888
B
 GLY 11VAL 890
X
 GLY 509TYR 526
Y
 SER 513TYR 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 5YVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
26 40Right-handed alpha
Helix 3
AA3
A
45 56Right-handed alpha
Helix 4
AA4
A
61 78Right-handed alpha
Helix 5
AA5
A
84 98Right-handed alpha
Helix 6
AA6
A
103 122Right-handed alpha
Helix 7
AA7
A
128 137Right-handed alpha
Helix 8
AA8
A
142 159Right-handed alpha
Helix 9
AA9
A
160 164Right-handed 310
Helix 10
AB1
A
171 182Right-handed alpha
Helix 11
AB2
A
187 199Right-handed alpha
Helix 12
AB3
A
213 221Right-handed alpha
Helix 13
AB4
A
222 226Right-handed 310
Helix 14
AB5
A
228 245Right-handed alpha
Helix 15
AB6
A
254 265Right-handed alpha
Helix 16
AB7
A
269 276Right-handed alpha
Helix 17
AB8
A
277 286Right-handed alpha
Helix 18
AB9
A
287 292Right-handed 310
Helix 19
AC1
A
296 308Right-handed alpha
Helix 20
AC2
A
311 317Right-handed alpha
Helix 21
AC3
A
374 391Right-handed alpha
Helix 22
AC4
A
394 406Right-handed alpha
Helix 23
AC5
A
410 424Right-handed alpha
Helix 24
AC6
A
432 434Right-handed 310
Helix 25
AC7
A
435 447Right-handed alpha
Helix 26
AC8
A
451 464Right-handed alpha
Helix 27
AC9
A
465 471Right-handed alpha
Helix 28
AD1
A
477 490Right-handed alpha
Helix 29
AD2
A
493 512Right-handed alpha
Helix 30
AD3
A
513 516Right-handed 310
Helix 31
AD4
A
518 533Right-handed alpha
Helix 32
AD5
A
537 553Right-handed alpha
Helix 33
AD6
A
554 557Right-handed 310
Helix 34
AD7
A
558 576Right-handed alpha
Helix 35
AD8
A
582 598Right-handed alpha
Helix 36
AD9
A
599 603Right-handed 310
Helix 37
AE1
A
604 629Right-handed alpha
Helix 38
AE2
A
638 656Right-handed alpha
Helix 39
AE3
A
659 665Right-handed alpha
Helix 40
AE4
A
668 676Right-handed alpha
Helix 41
AE5
A
680 698Right-handed alpha
Helix 42
AE6
A
702 716Right-handed alpha
Helix 43
AE7
A
718 720Right-handed 310
Helix 44
AE8
A
721 740Right-handed alpha
Helix 45
AE9
A
741 744Right-handed 310
Helix 46
AF1
A
746 759Right-handed alpha
Helix 47
AF2
A
764 782Right-handed alpha
Helix 48
AF3
A
782 787Right-handed alpha
Helix 49
AF4
A
789 801Right-handed alpha
Helix 50
AF5
A
808 824Right-handed alpha
Helix 51
AF6
A
828 830Right-handed 310
Helix 52
AF7
A
831 840Right-handed alpha
Helix 53
AF8
A
846 863Right-handed alpha
Helix 54
AF9
A
868 874Right-handed alpha
Helix 55
AG1
A
877 888Right-handed alpha
Helix 56
AG2
B
12 21Right-handed alpha
Helix 57
AG3
B
27 38Right-handed alpha
Helix 58
AG4
B
51 56Right-handed alpha
Helix 59
AG5
B
61 79Right-handed alpha
Helix 60
AG6
B
87 99Right-handed alpha
Helix 61
AG7
B
105 118Right-handed alpha
Helix 62
AG8
B
128 137Right-handed alpha
Helix 63
AG9
B
146 158Right-handed alpha
Helix 64
AH1
B
174 182Right-handed alpha
Helix 65
AH2
B
189 199Right-handed alpha
Helix 66
AH3
B
213 221Right-handed alpha
Helix 67
AH4
B
222 224Right-handed 310
Helix 68
AH5
B
228 245Right-handed alpha
Helix 69
AH6
B
253 266Right-handed alpha
Helix 70
AH7
B
269 285Right-handed alpha
Helix 71
AH8
B
286 291Right-handed 310
Helix 72
AH9
B
296 308Right-handed alpha
Helix 73
AI1
B
374 389Right-handed alpha
Helix 74
AI2
B
399 406Right-handed alpha
Helix 75
AI3
B
410 424Right-handed alpha
Helix 76
AI4
B
429 434Right-handed 310
Helix 77
AI5
B
435 447Right-handed alpha
Helix 78
AI6
B
451 465Right-handed alpha
Helix 79
AI7
B
477 490Right-handed alpha
Helix 80
AI8
B
493 512Right-handed alpha
Helix 81
AI9
B
513 516Right-handed 310
Helix 82
AJ1
B
518 531Right-handed alpha
Helix 83
AJ2
B
537 552Right-handed alpha
Helix 84
AJ3
B
560 576Right-handed alpha
Helix 85
AJ4
B
582 598Right-handed alpha
Helix 86
AJ5
B
599 603Right-handed 310
Helix 87
AJ6
B
604 629Right-handed alpha
Helix 88
AJ7
B
638 656Right-handed alpha
Helix 89
AJ8
B
659 665Right-handed alpha
Helix 90
AJ9
B
668 676Right-handed alpha
Helix 91
AK1
B
680 698Right-handed alpha
Helix 92
AK2
B
702 704Right-handed 310
Helix 93
AK3
B
705 716Right-handed alpha
Helix 94
AK4
B
718 720Right-handed 310
Helix 95
AK5
B
721 740Right-handed alpha
Helix 96
AK6
B
741 744Right-handed 310
Helix 97
AK7
B
746 759Right-handed alpha
Helix 98
AK8
B
764 782Right-handed alpha
Helix 99
AK9
B
782 787Right-handed alpha
Helix 100
AL1
B
789 801Right-handed alpha
Helix 101
AL2
B
807 824Right-handed alpha
Helix 102
AL3
B
828 830Right-handed 310
Helix 103
AL4
B
831 840Right-handed alpha
Helix 104
AL5
B
846 862Right-handed alpha
Helix 105
AL6
B
867 874Right-handed alpha
Helix 106
AL7
B
877 888Right-handed alpha
Helix 107
AL8
X
512 521Right-handed alpha
Helix 108
AL9
Y
515 521Right-handed alpha
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There are no sheets in PDB entry 5YVG
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