Analysis of interatomic Contacts of Structural Units in PDB entry:
5YVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YVH entry

There are 2 chains in PDB entry 5YVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 5GLY 889
B
 PRO 508TYR 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5YVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 23Right-handed alpha
Helix 2
AA2
A
26 41Right-handed alpha
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
61 76Right-handed alpha
Helix 5
AA5
A
77 78Right-handed 310
Helix 6
AA6
A
79 83Right-handed 310
Helix 7
AA7
A
84 99Right-handed alpha
Helix 8
AA8
A
103 121Right-handed alpha
Helix 9
AA9
A
128 138Right-handed alpha
Helix 10
AB1
A
141 159Right-handed alpha
Helix 11
AB2
A
174 182Right-handed alpha
Helix 12
AB3
A
187 200Right-handed alpha
Helix 13
AB4
A
206 211Right-handed alpha
Helix 14
AB5
A
212 225Right-handed alpha
Helix 15
AB6
A
228 246Right-handed alpha
Helix 16
AB7
A
246 251Right-handed alpha
Helix 17
AB8
A
253 266Right-handed alpha
Helix 18
AB9
A
269 284Right-handed alpha
Helix 19
AC1
A
288 294Right-handed alpha
Helix 20
AC2
A
296 308Right-handed alpha
Helix 21
AC3
A
374 391Right-handed alpha
Helix 22
AC4
A
394 406Right-handed alpha
Helix 23
AC5
A
410 424Right-handed alpha
Helix 24
AC6
A
424 433Right-handed alpha
Helix 25
AC7
A
435 447Right-handed alpha
Helix 26
AC8
A
451 465Right-handed alpha
Helix 27
AC9
A
465 472Right-handed alpha
Helix 28
AD1
A
477 490Right-handed alpha
Helix 29
AD2
A
493 512Right-handed alpha
Helix 30
AD3
A
513 517Right-handed 310
Helix 31
AD4
A
518 533Right-handed alpha
Helix 32
AD5
A
534 553Right-handed alpha
Helix 33
AD6
A
554 557Right-handed 310
Helix 34
AD7
A
558 576Right-handed alpha
Helix 35
AD8
A
582 598Right-handed alpha
Helix 36
AD9
A
601 629Right-handed alpha
Helix 37
AE1
A
638 656Right-handed alpha
Helix 38
AE2
A
659 665Right-handed alpha
Helix 39
AE3
A
667 676Right-handed alpha
Helix 40
AE4
A
680 698Right-handed alpha
Helix 41
AE5
A
699 704Right-handed 310
Helix 42
AE6
A
705 716Right-handed alpha
Helix 43
AE7
A
721 739Right-handed alpha
Helix 44
AE8
A
743 746Right-handed 310
Helix 45
AE9
A
747 759Right-handed alpha
Helix 46
AF1
A
765 778Right-handed alpha
Helix 47
AF2
A
793 803Right-handed alpha
Helix 48
AF3
A
807 824Right-handed alpha
Helix 49
AF4
A
835 840Right-handed alpha
Helix 50
AF5
A
846 863Right-handed alpha
Helix 51
AF6
A
872 876Right-handed 310
Helix 52
AF7
A
877 887Right-handed alpha
Helix 53
AF8
B
513 522Right-handed alpha
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There are no sheets in PDB entry 5YVH
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