Analysis of interatomic Contacts of Structural Units in PDB entry:
5YVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YVI entry

There are 2 chains in PDB entry 5YVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4VAL 890
B
 PRO 508TYR 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 5YVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
61 80Right-handed alpha
Helix 5
AA5
A
81 83Right-handed 310
Helix 6
AA6
A
86 97Right-handed alpha
Helix 7
AA7
A
103 120Right-handed alpha
Helix 8
AA8
A
122 126Right-handed 310
Helix 9
AA9
A
128 138Right-handed alpha
Helix 10
AB1
A
141 160Right-handed alpha
Helix 11
AB2
A
171 180Right-handed alpha
Helix 12
AB3
A
181 185Right-handed 310
Helix 13
AB4
A
187 200Right-handed alpha
Helix 14
AB5
A
206 211Right-handed alpha
Helix 15
AB6
A
212 223Right-handed alpha
Helix 16
AB7
A
228 246Right-handed alpha
Helix 17
AB8
A
246 251Right-handed alpha
Helix 18
AB9
A
253 266Right-handed alpha
Helix 19
AC1
A
269 286Right-handed alpha
Helix 20
AC2
A
288 293Right-handed alpha
Helix 21
AC3
A
296 307Right-handed alpha
Helix 22
AC4
A
311 318Right-handed alpha
Helix 23
AC5
A
374 391Right-handed alpha
Helix 24
AC6
A
394 406Right-handed alpha
Helix 25
AC7
A
410 424Right-handed alpha
Helix 26
AC8
A
428 433Right-handed alpha
Helix 27
AC9
A
435 447Right-handed alpha
Helix 28
AD1
A
451 464Right-handed alpha
Helix 29
AD2
A
465 472Right-handed alpha
Helix 30
AD3
A
477 490Right-handed alpha
Helix 31
AD4
A
493 512Right-handed alpha
Helix 32
AD5
A
513 517Right-handed 310
Helix 33
AD6
A
518 533Right-handed alpha
Helix 34
AD7
A
535 553Right-handed alpha
Helix 35
AD8
A
554 557Right-handed 310
Helix 36
AD9
A
558 576Right-handed alpha
Helix 37
AE1
A
582 598Right-handed alpha
Helix 38
AE2
A
599 603Right-handed 310
Helix 39
AE3
A
604 629Right-handed alpha
Helix 40
AE4
A
638 656Right-handed alpha
Helix 41
AE5
A
659 665Right-handed alpha
Helix 42
AE6
A
667 676Right-handed alpha
Helix 43
AE7
A
680 698Right-handed alpha
Helix 44
AE8
A
698 703Right-handed alpha
Helix 45
AE9
A
705 716Right-handed alpha
Helix 46
AF1
A
721 740Right-handed alpha
Helix 47
AF2
A
741 749Right-handed 310
Helix 48
AF3
A
750 759Right-handed alpha
Helix 49
AF4
A
764 782Right-handed alpha
Helix 50
AF5
A
782 787Right-handed alpha
Helix 51
AF6
A
789 802Right-handed alpha
Helix 52
AF7
A
807 820Right-handed alpha
Helix 53
AF8
A
824 830Right-handed 310
Helix 54
AF9
A
831 841Right-handed alpha
Helix 55
AG1
A
846 862Right-handed alpha
Helix 56
AG2
A
869 874Right-handed alpha
Helix 57
AG3
A
877 889Right-handed alpha
Helix 58
AG4
B
513 522Right-handed alpha
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There are no sheets in PDB entry 5YVI
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il