Analysis of interatomic Contacts of Structural Units in PDB entry:
5YVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YVM entry

There is 1 chain in PDB entry 5YVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2LEU 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5YVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 20Right-handed 310
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
40 45Right-handed alpha
Helix 4
AA4
A
46 59Right-handed alpha
Helix 5
AA5
A
73 88Right-handed alpha
Helix 6
AA6
A
97 114Right-handed alpha
Helix 7
AA7
A
121 126Right-handed 310
Helix 8
AA8
A
153 157Right-handed 310
Helix 9
AA9
A
175 179Right-handed 310
Helix 10
AB1
A
187 191Right-handed alpha
Helix 11
AB2
A
194 215Right-handed alpha
Helix 12
AB3
A
222 243Right-handed alpha
Helix 13
AB4
A
246 267Right-handed alpha
Helix 14
AB5
A
270 283Right-handed alpha
Helix 15
AB6
A
287 306Right-handed alpha
Helix 16
AB7
A
308 322Right-handed alpha
Helix 17
AB8
A
331 349Right-handed alpha
Helix 18
AB9
A
354 359Right-handed 310
Helix 19
AC1
A
361 363Right-handed 310
Helix 20
AC2
A
364 376Right-handed alpha
Helix 21
AC3
A
376 383Right-handed alpha
Helix 22
AC4
A
388 400Right-handed alpha
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There are 2 sheets in PDB entry 5YVM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
182 186parallel
Strand 3
A
143 147parallel
Strand 4
A
91 96parallel
Strand 5
A
32 38parallel
Strand 6
A
61 68parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
172 173anti-parallel
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