Analysis of interatomic Contacts of Structural Units in PDB entry:
5YVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YVQ entry

There are 2 chains in PDB entry 5YVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 138ALA 504
B
 MET 1LYS 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5YVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
138 149Right-handed alpha
Helix 2
AA2
A
152 156Right-handed 310
Helix 3
AA3
A
162 171Right-handed alpha
Helix 4
AA4
A
172 181Right-handed alpha
Helix 5
AA5
A
352 358Right-handed 310
Helix 6
AA6
A
433 438Right-handed alpha
Helix 7
AA7
B
14 25Right-handed alpha
Helix 8
AA8
B
36 41Right-handed alpha
Helix 9
AA9
B
42 44Right-handed 310
Helix 10
AB1
B
65 69Right-handed 310
Helix 11
AB2
B
82 87Right-handed alpha
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There are 9 sheets in PDB entry 5YVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
209 216anti-parallel
Strand 3
A
226 232anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 245first strand
Strand 2
A
248 256anti-parallel
Strand 3
A
259 262anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
289 293anti-parallel
Strand 3
A
297 302anti-parallel
Strand 4
A
318 321anti-parallel
Strand 5
A
327 328anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 380first strand
Strand 2
A
384 391anti-parallel
Strand 3
A
395 402anti-parallel
Strand 4
A
412 417anti-parallel
Strand 5
A
422 424anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 446first strand
Strand 2
A
484 494anti-parallel
Strand 3
A
465 471anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 451first strand
Strand 2
A
484 494anti-parallel
Strand 3
A
497 500anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
75 79anti-parallel
Strand 3
B
49 53anti-parallel
Strand 4
B
59 63anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
29 30anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
100 102anti-parallel
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