Analysis of interatomic Contacts of Structural Units in PDB entry:
5YWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YWD entry

There is 1 chain in PDB entry 5YWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 214ARG 1579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5YWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
223 230Right-handed alpha
Helix 2
AA2
B
232 243Right-handed alpha
Helix 3
AA3
B
254 257Right-handed 310
Helix 4
AA4
B
258 276Right-handed alpha
Helix 5
AA5
B
284 296Right-handed alpha
Helix 6
AA6
B
296 329Right-handed alpha
Helix 7
AA7
B
355 402Right-handed alpha
Helix 8
AA8
B
403 409Right-handed alpha
Helix 9
AA9
B
410 412Right-handed 310
Helix 10
AB1
B
413 439Right-handed alpha
Helix 11
AB2
B
440 457Right-handed alpha
Helix 12
AB3
B
459 504Right-handed alpha
Helix 13
AB4
B
505 512Right-handed alpha
Helix 14
AB5
B
514 564Right-handed alpha
Helix 15
AB6
B
572 615Right-handed alpha
Helix 16
AB7
B
718 727Right-handed alpha
Helix 17
AB8
B
783 790Right-handed alpha
Helix 18
AB9
B
795 806Right-handed alpha
Helix 19
AC1
B
808 815Right-handed alpha
Helix 20
AC2
B
824 828Right-handed 310
Helix 21
AC3
B
831 846Right-handed alpha
Helix 22
AC4
B
861 872Right-handed alpha
Helix 23
AC5
B
893 897Right-handed 310
Helix 24
AC6
B
914 920Right-handed alpha
Helix 25
AC7
B
1000 1009Right-handed alpha
Helix 26
AC8
B
1011 1039Right-handed alpha
Helix 27
AC9
B
1061 1107Right-handed alpha
Helix 28
AD1
B
1109 1116Right-handed alpha
Helix 29
AD2
B
1117 1135Right-handed alpha
Helix 30
AD3
B
1135 1161Right-handed alpha
Helix 31
AD4
B
1163 1166Right-handed 310
Helix 32
AD5
B
1167 1210Right-handed alpha
Helix 33
AD6
B
1210 1218Right-handed alpha
Helix 34
AD7
B
1219 1274Right-handed alpha
Helix 35
AD8
B
1278 1320Right-handed alpha
Helix 36
AD9
B
1384 1393Right-handed alpha
Helix 37
AE1
B
1414 1420Right-handed alpha
Helix 38
AE2
B
1435 1441Right-handed alpha
Helix 39
AE3
B
1447 1458Right-handed alpha
Helix 40
AE4
B
1460 1466Right-handed alpha
Helix 41
AE5
B
1483 1499Right-handed alpha
Helix 42
AE6
B
1513 1528Right-handed alpha
Helix 43
AE7
B
1539 1546Right-handed alpha
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There are 5 sheets in PDB entry 5YWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
701 703first strand
Strand 2
B
679 682anti-parallel
Strand 3
B
736 738anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
685 686first strand
Strand 2
B
696 697anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
771 773first strand
Strand 2
B
850 854parallel
Strand 3
B
883 887parallel
Strand 4
B
708 713parallel
Strand 5
B
899 904parallel
Strand 6
B
907 913anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1362 1369first strand
Strand 2
B
1345 1352anti-parallel
Strand 3
B
1400 1405anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1422 1425first strand
Strand 2
B
1502 1506parallel
Strand 3
B
1532 1536parallel
Strand 4
B
1374 1378parallel
Strand 5
B
1548 1552parallel
Strand 6
B
1557 1560anti-parallel
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