Analysis of interatomic Contacts of Structural Units in PDB entry:
5YWG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YWG entry

There are 2 chains in PDB entry 5YWG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 29TYR 434
B
 PHE 29TYR 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5YWG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 69Right-handed alpha
Helix 2
AA2
A
77 81Right-handed 310
Helix 3
AA3
A
124 136Right-handed alpha
Helix 4
AA4
A
148 158Right-handed alpha
Helix 5
AA5
A
233 246Right-handed alpha
Helix 6
AA6
A
292 302Right-handed alpha
Helix 7
AA7
A
315 326Right-handed alpha
Helix 8
AA8
A
339 345Right-handed alpha
Helix 9
AA9
A
346 351Right-handed alpha
Helix 10
AB1
A
355 364Right-handed alpha
Helix 11
AB2
A
422 433Right-handed alpha
Helix 12
AB3
B
56 69Right-handed alpha
Helix 13
AB4
B
77 81Right-handed 310
Helix 14
AB5
B
124 136Right-handed alpha
Helix 15
AB6
B
148 159Right-handed alpha
Helix 16
AB7
B
233 246Right-handed alpha
Helix 17
AB8
B
292 302Right-handed alpha
Helix 18
AB9
B
315 325Right-handed alpha
Helix 19
AC1
B
339 345Right-handed alpha
Helix 20
AC2
B
346 351Right-handed alpha
Helix 21
AC3
B
355 364Right-handed alpha
Helix 22
AC4
B
422 432Right-handed alpha
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There are 4 sheets in PDB entry 5YWG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 170first strand
Strand 2
A
174 182anti-parallel
Strand 3
A
185 192anti-parallel
Strand 4
A
138 146parallel
Strand 5
A
44 53anti-parallel
Strand 6
A
95 102parallel
Strand 7
A
85 92anti-parallel
Strand 8
A
71 76anti-parallel
Strand 9
A
207 208anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
265 271anti-parallel
Strand 3
A
278 284anti-parallel
Strand 4
A
221 230parallel
Strand 5
A
305 313anti-parallel
Strand 6
A
392 399parallel
Strand 7
A
376 381anti-parallel
Strand 8
A
368 371anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 170first strand
Strand 2
B
174 180anti-parallel
Strand 3
B
186 192anti-parallel
Strand 4
B
138 146parallel
Strand 5
B
44 53anti-parallel
Strand 6
B
95 102parallel
Strand 7
B
85 92anti-parallel
Strand 8
B
71 76anti-parallel
Strand 9
B
207 208anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
265 271anti-parallel
Strand 3
B
278 284anti-parallel
Strand 4
B
221 230parallel
Strand 5
B
305 313anti-parallel
Strand 6
B
392 400parallel
Strand 7
B
375 381anti-parallel
Strand 8
B
368 371anti-parallel
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