Analysis of interatomic Contacts of Structural Units in PDB entry:
5YWI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YWI entry

There is 1 chain in PDB entry 5YWI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 36ILE 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5YWI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 69Right-handed alpha
Helix 2
AA2
A
112 116Right-handed 310
Helix 3
AA3
A
124 136Right-handed alpha
Helix 4
AA4
A
148 159Right-handed alpha
Helix 5
AA5
A
233 246Right-handed alpha
Helix 6
AA6
A
292 301Right-handed alpha
Helix 7
AA7
A
315 325Right-handed alpha
Helix 8
AA8
A
339 345Right-handed alpha
Helix 9
AA9
A
345 350Right-handed alpha
Helix 10
AB1
A
355 366Right-handed alpha
Helix 11
AB2
A
422 429Right-handed alpha
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There are 2 sheets in PDB entry 5YWI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 170first strand
Strand 2
A
174 182anti-parallel
Strand 3
A
185 191anti-parallel
Strand 4
A
138 146parallel
Strand 5
A
44 53anti-parallel
Strand 6
A
95 102parallel
Strand 7
A
85 92anti-parallel
Strand 8
A
71 76anti-parallel
Strand 9
A
207 208anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
265 271anti-parallel
Strand 3
A
278 284anti-parallel
Strand 4
A
221 230parallel
Strand 5
A
305 313anti-parallel
Strand 6
A
392 399parallel
Strand 7
A
376 381anti-parallel
Strand 8
A
368 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il