Analysis of interatomic Contacts of Structural Units in PDB entry:
5YWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YWM entry

There is 1 chain in PDB entry 5YWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLY 7VAL 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5YWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
21 26Right-handed alpha
Helix 2
AA2
X
27 30Right-handed 310
Helix 3
AA3
X
76 90Right-handed alpha
Helix 4
AA4
X
121 126Right-handed alpha
Helix 5
AA5
X
130 151Right-handed alpha
Helix 6
AA6
X
159 161Right-handed 310
Helix 7
AA7
X
195 199Right-handed 310
Helix 8
AA8
X
200 205Right-handed alpha
Helix 9
AA9
X
212 229Right-handed alpha
Helix 10
AB1
X
238 251Right-handed alpha
Helix 11
AB2
X
251 261Right-handed alpha
Helix 12
AB3
X
262 264Right-handed 310
Helix 13
AB4
X
281 286Right-handed 310
Helix 14
AB5
X
295 306Right-handed alpha
Helix 15
AB6
X
315 321Right-handed alpha
Helix 16
AB7
X
322 326Right-handed 310
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There are 3 sheets in PDB entry 5YWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
35 36first strand
Strand 2
X
98 103parallel
Strand 3
X
110 115anti-parallel
Strand 4
X
65 70anti-parallel
Strand 5
X
53 59anti-parallel
Strand 6
X
40 45anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
153 154first strand
Strand 2
X
181 182anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
163 166first strand
Strand 2
X
171 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il