Analysis of interatomic Contacts of Structural Units in PDB entry:
5YWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YWP entry

There are 10 chains in PDB entry 5YWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ALA 500
B	SER 1	TYR 74
C	PHE 1	ALA 500
D	SER 1	TYR 74
E	PHE 1	ALA 500
F	SER 1	TYR 74
M	ASP 1	CYS 215
N	GLN 1	ARG 218
Q	ASP 1	CYS 215
R	GLN 1	ARG 218

There are 67 helices in PDB entry 5YWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	87	Right-handed 310
Helix 2	AA2	A	148	154	Right-handed alpha
Helix 3	AA3	A	154	161	Right-handed alpha
Helix 4	AA4	A	214	221	Right-handed alpha
Helix 5	AA5	A	235	240	Right-handed 310
Helix 6	AA6	A	258	266	Right-handed alpha
Helix 7	AA7	A	402	418	Right-handed alpha
Helix 8	AA8	A	420	429	Right-handed 310
Helix 9	AA9	A	433	447	Right-handed alpha
Helix 10	AB1	A	448	452	Right-handed 310
Helix 11	AB2	A	458	463	Right-handed alpha
Helix 12	AB3	A	463	474	Right-handed alpha
Helix 13	AB4	A	479	485	Right-handed alpha
Helix 14	AB5	A	491	498	Right-handed alpha
Helix 15	AB6	B	21	25	Right-handed 310
Helix 16	AB7	B	26	39	Right-handed alpha
Helix 17	AB8	B	39	53	Right-handed alpha
Helix 18	AB9	B	57	71	Right-handed alpha
Helix 19	AC1	C	82	87	Right-handed 310
Helix 20	AC2	C	132	135	Right-handed 310
Helix 21	AC3	C	154	161	Right-handed alpha
Helix 22	AC4	C	191	196	Right-handed alpha
Helix 23	AC5	C	214	220	Right-handed alpha
Helix 24	AC6	C	235	240	Right-handed 310
Helix 25	AC7	C	258	265	Right-handed alpha
Helix 26	AC8	C	401	418	Right-handed alpha
Helix 27	AC9	C	420	427	Right-handed 310
Helix 28	AD1	C	433	447	Right-handed alpha
Helix 29	AD2	C	448	452	Right-handed 310
Helix 30	AD3	C	458	469	Right-handed alpha
Helix 31	AD4	C	469	474	Right-handed alpha
Helix 32	AD5	C	479	485	Right-handed alpha
Helix 33	AD6	C	491	498	Right-handed alpha
Helix 34	AD7	D	21	39	Right-handed alpha
Helix 35	AD8	D	39	53	Right-handed alpha
Helix 36	AD9	D	56	59	Right-handed 310
Helix 37	AE1	D	60	71	Right-handed alpha
Helix 38	AE2	E	82	87	Right-handed 310
Helix 39	AE3	E	148	154	Right-handed alpha
Helix 40	AE4	E	154	161	Right-handed alpha
Helix 41	AE5	E	197	201	Right-handed 310
Helix 42	AE6	E	214	220	Right-handed alpha
Helix 43	AE7	E	258	266	Right-handed alpha
Helix 44	AE8	E	387	391	Right-handed 310
Helix 45	AE9	E	401	418	Right-handed alpha
Helix 46	AF1	E	422	428	Right-handed 310
Helix 47	AF2	E	433	447	Right-handed alpha
Helix 48	AF3	E	448	452	Right-handed 310
Helix 49	AF4	E	458	472	Right-handed alpha
Helix 50	AF5	E	479	485	Right-handed alpha
Helix 51	AF6	E	491	498	Right-handed alpha
Helix 52	AF7	F	21	39	Right-handed alpha
Helix 53	AF8	F	39	47	Right-handed alpha
Helix 54	AF9	F	47	53	Right-handed alpha
Helix 55	AG1	F	56	58	Right-handed 310
Helix 56	AG2	F	59	71	Right-handed alpha
Helix 57	AG3	M	122	127	Right-handed alpha
Helix 58	AG4	M	184	190	Right-handed alpha
Helix 59	AG5	N	28	32	Right-handed 310
Helix 60	AG6	N	62	65	Right-handed 310
Helix 61	AG7	N	87	91	Right-handed 310
Helix 62	AG8	N	132	134	Right-handed 310
Helix 63	AG9	Q	122	127	Right-handed alpha
Helix 64	AH1	Q	184	190	Right-handed alpha
Helix 65	AH2	R	28	32	Right-handed 310
Helix 66	AH3	R	87	91	Right-handed 310
Helix 67	AH4	R	132	134	Right-handed 310

There are 44 sheets in PDB entry 5YWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	29	35	parallel
Strand 3	A	38	45	anti-parallel
Strand 4	A	138	144	anti-parallel
Strand 5	A	164	168	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	286	290	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	112	130	anti-parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	209	213	anti-parallel
Strand 5	A	271	274	anti-parallel
Strand 6	A	278	280	anti-parallel
Strand 7	A	48	50	anti-parallel
Strand 8	A	135	136	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	112	130	anti-parallel
Strand 3	A	53	73	anti-parallel
Strand 4	A	225	226	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	181	first strand
Strand 2	A	184	189	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	322	328	anti-parallel
Strand 3	A	315	316	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	322	328	anti-parallel
Strand 3	A	368	374	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	360	361	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	381	first strand
Strand 2	A	396	398	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	50	anti-parallel
Strand 4	C	278	280	anti-parallel
Strand 5	C	271	274	anti-parallel
Strand 6	C	209	213	anti-parallel
Strand 7	C	202	206	anti-parallel
Strand 8	C	112	130	anti-parallel
Strand 9	C	138	144	first strand
Strand 10	C	164	165	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	112	130	anti-parallel
Strand 3	C	202	206	anti-parallel
Strand 4	C	209	213	anti-parallel
Strand 5	C	271	274	anti-parallel
Strand 6	C	278	280	anti-parallel
Strand 7	C	38	50	anti-parallel
Strand 8	C	53	73	first strand
Strand 9	C	225	226	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	285	294	anti-parallel
Strand 3	C	184	190	anti-parallel
Strand 4	C	175	179	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	316	first strand
Strand 2	C	322	328	anti-parallel
Strand 3	C	368	374	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	342	first strand
Strand 2	C	379	385	anti-parallel
Strand 3	C	392	398	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	13	first strand
Strand 2	E	29	35	parallel
Strand 3	E	38	45	anti-parallel
Strand 4	E	137	144	anti-parallel
Strand 5	E	164	169	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	23	first strand
Strand 2	E	287	290	anti-parallel
Strand 3	E	184	190	anti-parallel
Strand 4	E	175	181	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	278	280	anti-parallel
Strand 3	E	270	274	anti-parallel
Strand 4	E	209	213	anti-parallel
Strand 5	E	202	206	anti-parallel
Strand 6	E	112	128	anti-parallel
Strand 7	E	58	73	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	278	280	anti-parallel
Strand 3	E	270	274	anti-parallel
Strand 4	E	209	213	anti-parallel
Strand 5	E	202	206	anti-parallel
Strand 6	E	112	128	anti-parallel
Strand 7	E	90	95	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	241	first strand
Strand 2	E	253	254	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	308	316	first strand
Strand 2	E	322	328	anti-parallel
Strand 3	E	368	374	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	335	336	first strand
Strand 2	E	360	361	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	383	385	first strand
Strand 2	E	392	394	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	71	76	anti-parallel
Strand 4	M	63	66	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	103	107	parallel
Strand 3	M	86	89	anti-parallel
Strand 4	M	36	39	anti-parallel
Strand 5	M	46	50	anti-parallel
Strand 6	M	54	55	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	115	119	first strand
Strand 2	M	130	140	anti-parallel
Strand 3	M	174	183	anti-parallel
Strand 4	M	160	164	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	154	155	first strand
Strand 2	M	145	151	anti-parallel
Strand 3	M	192	199	anti-parallel
Strand 4	M	205	211	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	112	116	parallel
Strand 3	N	92	101	anti-parallel
Strand 4	N	33	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	112	116	parallel
Strand 3	N	92	101	anti-parallel
Strand 4	N	104	108	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	125	129	first strand
Strand 2	N	140	148	anti-parallel
Strand 3	N	136	137	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	125	129	first strand
Strand 2	N	140	148	anti-parallel
Strand 3	N	183	189	anti-parallel
Strand 4	N	169	170	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	159	first strand
Strand 2	N	199	204	anti-parallel
Strand 3	N	209	214	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	174	176	first strand
Strand 2	N	179	181	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	13	first strand
Strand 2	Q	103	107	parallel
Strand 3	Q	86	88	anti-parallel
Strand 4	Q	37	39	anti-parallel
Strand 5	Q	46	47	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	19	24	first strand
Strand 2	Q	71	76	anti-parallel
Strand 3	Q	63	66	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	49	50	first strand
Strand 2	Q	54	55	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	115	119	first strand
Strand 2	Q	130	140	anti-parallel
Strand 3	Q	174	183	anti-parallel
Strand 4	Q	160	164	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	154	155	first strand
Strand 2	Q	145	151	anti-parallel
Strand 3	Q	192	199	anti-parallel
Strand 4	Q	202	211	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	5	6	first strand
Strand 2	R	18	23	anti-parallel
Strand 3	R	78	83	anti-parallel
Strand 4	R	68	73	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	12	first strand
Strand 2	R	112	116	parallel
Strand 3	R	92	101	anti-parallel
Strand 4	R	34	39	anti-parallel
Strand 5	R	45	51	anti-parallel
Strand 6	R	58	60	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	12	first strand
Strand 2	R	112	116	parallel
Strand 3	R	92	101	anti-parallel
Strand 4	R	104	108	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	125	129	first strand
Strand 2	R	140	150	anti-parallel
Strand 3	R	179	189	anti-parallel
Strand 4	R	169	170	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	136	137	first strand
Strand 2	R	140	150	anti-parallel
Strand 3	R	179	189	anti-parallel
Strand 4	R	174	176	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	156	159	first strand
Strand 2	R	199	204	anti-parallel
Strand 3	R	209	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YWP