Analysis of interatomic Contacts of Structural Units in PDB entry:
5YWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YWW entry

There is 1 chain in PDB entry 5YWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5YWW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 13Right-handed alpha
Helix 2
AA2
A
14 21Right-handed alpha
Helix 3
AA3
A
32 44Right-handed alpha
Helix 4
AA4
A
46 66Right-handed alpha
Helix 5
AA5
A
81 94Right-handed alpha
Helix 6
AA6
A
101 112Right-handed alpha
Helix 7
AA7
A
125 131Right-handed 310
Helix 8
AA8
A
167 183Right-handed alpha
Helix 9
AA9
A
230 235Right-handed 310
Helix 10
AB1
A
237 247Right-handed alpha
Helix 11
AB2
A
260 275Right-handed alpha
Helix 12
AB3
A
306 315Right-handed alpha
Helix 13
AB4
A
326 339Right-handed alpha
Helix 14
AB5
A
351 357Right-handed alpha
Helix 15
AB6
A
364 366Right-handed 310
Helix 16
AB7
A
367 372Right-handed alpha
Helix 17
AB8
A
401 405Right-handed 310
Helix 18
AB9
A
435 454Right-handed alpha
Helix 19
AC1
A
473 480Right-handed 310
Helix 20
AC2
A
481 496Right-handed alpha
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There are 4 sheets in PDB entry 5YWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
27 31parallel
Strand 3
A
3 6parallel
Strand 4
A
96 99parallel
Strand 5
A
115 117parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
135 141anti-parallel
Strand 4
A
219 223anti-parallel
Strand 5
A
205 210anti-parallel
Strand 6
A
197 202anti-parallel
Strand 7
A
189 194anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
318 321parallel
Strand 3
A
342 346parallel
Strand 4
A
250 254parallel
Strand 5
A
374 379parallel
Strand 6
A
382 394anti-parallel
Strand 7
A
406 413anti-parallel
Strand 8
A
419 426anti-parallel
Strand 9
A
429 434anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 464first strand
Strand 2
A
467 472anti-parallel
Strand 3
A
499 503parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il