Analysis of interatomic Contacts of Structural Units in PDB entry:
5YWY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YWY entry

There are 3 chains in PDB entry 5YWY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 18CYS 346
H
 GLU 20PRO 242
L
 ASP 23CYS 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5YWY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 42Right-handed alpha
Helix 2
AA2
A
51 83Right-handed alpha
Helix 3
AA3
A
88 123Right-handed alpha
Helix 4
AA4
A
124 129Right-handed alpha
Helix 5
AA5
A
133 153Right-handed alpha
Helix 6
AA6
A
178 214Right-handed alpha
Helix 7
AA7
A
266 284Right-handed alpha
Helix 8
AA8
A
285 298Right-handed alpha
Helix 9
AA9
A
309 320Right-handed alpha
Helix 10
AB1
A
320 332Right-handed alpha
Helix 11
AB2
A
333 344Right-handed alpha
Helix 12
AB3
H
81 84Right-handed 310
Helix 13
AB4
H
106 110Right-handed 310
Helix 14
AB5
H
183 185Right-handed 310
Helix 15
AB6
L
101 105Right-handed 310
Helix 16
AB7
L
143 149Right-handed alpha
Helix 17
AB8
L
205 210Right-handed alpha
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There are 12 sheets in PDB entry 5YWY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
170 172anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 25first strand
Strand 2
H
37 44anti-parallel
Strand 3
H
97 102anti-parallel
Strand 4
H
87 92anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
134 138parallel
Strand 3
H
111 121anti-parallel
Strand 4
H
53 58anti-parallel
Strand 5
H
64 71anti-parallel
Strand 6
H
76 79anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 31first strand
Strand 2
H
134 138parallel
Strand 3
H
111 121anti-parallel
Strand 4
H
124 130anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
147 151first strand
Strand 2
H
162 172anti-parallel
Strand 3
H
201 211anti-parallel
Strand 4
H
190 192anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
147 151first strand
Strand 2
H
162 172anti-parallel
Strand 3
H
201 211anti-parallel
Strand 4
H
196 198anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
178 181first strand
Strand 2
H
221 226anti-parallel
Strand 3
H
231 236anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
26 29first strand
Strand 2
L
41 47anti-parallel
Strand 3
L
92 97anti-parallel
Strand 4
L
84 89anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
32 35first strand
Strand 2
L
124 128parallel
Strand 3
L
106 112anti-parallel
Strand 4
L
55 60anti-parallel
Strand 5
L
66 71anti-parallel
Strand 6
L
75 76anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
32 35first strand
Strand 2
L
124 128parallel
Strand 3
L
106 112anti-parallel
Strand 4
L
119 120anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
136 140first strand
Strand 2
L
151 161anti-parallel
Strand 3
L
195 204anti-parallel
Strand 4
L
181 185anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
175 177first strand
Strand 2
L
167 172anti-parallel
Strand 3
L
213 219anti-parallel
Strand 4
L
227 232anti-parallel
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