Analysis of interatomic Contacts of Structural Units in PDB entry:
5YWZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YWZ entry

There is 1 chain in PDB entry 5YWZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 672GLN 913
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5YWZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
672 699Right-handed alpha
Helix 2
AA2
A
703 714Right-handed alpha
Helix 3
AA3
A
720 735Right-handed alpha
Helix 4
AA4
A
747 751Right-handed 310
Helix 5
AA5
A
756 759Right-handed 310
Helix 6
AA6
A
783 789Right-handed 310
Helix 7
AA7
A
826 830Right-handed 310
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There are 4 sheets in PDB entry 5YWZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
753 754first strand
Strand 2
A
805 823anti-parallel
Strand 3
A
870 874anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
856 862first strand
Strand 2
A
841 847anti-parallel
Strand 3
A
883 890anti-parallel
Strand 4
A
805 823anti-parallel
Strand 5
A
904 911anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
766 770first strand
Strand 2
A
776 780anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 801first strand
Strand 2
A
899 902anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il